Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01518 ATGAAAGAGACGGGTAGGAAACAAGGGGCAGCTTCTCCTTGTGCAGCTTGCAAGCTTCTTCGGAGGCGGTGTGCGCAGGATTGTGTGTTTGCTCCTTATTTTCCTGCCGATGAACCTCAGAAGTTTGCTAATGTGCACAAGGTGTTTGGTGCTAGCAATGTCAACAAGATGTTACAGGAATTGCAAGTGCACCAACGTGGTGACGCCGTTAGTAGCATGGTTTACGAAGCGAACGCAAGGGTACGCGACCCAGTGTATGGATGTGTGGGGGCTATCTCATCTCTACAACAGCAGATCGACATCCTTCAGACGCAATTAGCAGTTGCACAAGCTGAGGTGGTACACTTGCGACTGCGCCAGGCCGCGTCAATGTCGAATCTAGCCGTTAATTCAAATGATAGCGCATCGCCATCGTCGAAGCTAATAACAGTACCACATAGCAAGTCGTTGTTTACCATAGATATGGTGGTTGATCATCAGGCCAACATGGGGGAGTCTTTGTGGTCATGCTAG 513 0.4951 MKETGRKQGAASPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELQVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDILQTQLAVAQAEVVHLRLRQAASMSNLAVNSNDSASPSSKLITVPHSKSLFTIDMVVDHQANMGESLWSC* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01518 170 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Eupl06g01518 170 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Eupl06g01518 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 10 137 - -
Eupl06g01518 170 Coils Coil 92 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01518 Eupl-Chr6 28443096 28445166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01518 1 170 AS2 family AT1G31320 73.410 4.82e-80 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Eupl06g01518 LOB 2.5e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01518 - - ming:122063771 288.885