Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01497 ATGAATTACTGTGTTCCCAATTGGAATATGGAGGATGATCTTCTCCCTGCTGCCATCCAGAATAAATCGATGGGGCCCGACCATGAGCTCGTCGAGCTCTTATGGCAAAATGGGCAGGTGGTTTTGCACAGCCAAACACATCGGAAACCAAGTCAAACACCTAATGTATCGGGACAAATTCAGAAACCTGAACGACCAACAACGAAGGGTGGTGTATCTTTTGGGAATTCGAGCAATTTGATTCAAGAAGATGAGATGGCATCATGGATCCAATACCCCCTTGAAGATTCTCTGGATAAGGAGTTGTGCTCCGACTTCTTCTATGAATTAACAAATTCCCACCCAATTGAGGTTGAGAAGCCAATAAAGCAATGTGAAGGAGACAGAAACGCTAAGTATGGTGCTTCGGAGGAAACCAATGTCTTCATCACAAGTAGTACAGAAAGACCTCAACAACCAATTTTTAAACAATCCAATAATCCAAATTTTGCTGAAAATCCAATGCCACCTCCTAGATTGCAGATTCCTGATATGACACAGCAAGATCCTAACTTGGGTGGAGTAGACAGGATTGTAAATTTTCCCCATATATCAAGGTCAGTCAAGGCTGAATTGGGCTCATCAAATGGACGGATCAGAGGAAAAGGATCAGTAGATGTGACAAGGAGAGAGTTTGGAGAGTCTTCAGTGATGACAATTGGGTCGAGTCACTGTGGCAGCAACCAACTACCGAACGAGGCTGATTTCAGTCGAGTTTCAAGTAATGGGCTTGGTGCCACAGGTATGTTTGCGGGGCCCAACAAGGATGATATTCGGAAGGTGTCATCTCAGTGTGAGAGAGGGCAGACAGACACACTTGAGCCGACTGTTACTTCATCTTCCGGTGGATCTGGGGGTAGTTTCGGAGGAACAGGCAAACAATCAACTGGCAACCACAGCCACAAAAGGAAAGGAAGAGATGCTGATGAATCTGAGTCCCAAAGTGAGGAGGCTGAATTCGAGTCAGCTGAGGCAAATAAACCACCTCAACGATCTGGGTCTGGCCGTAGGAGCCGTGCTGCCGAGGTTCATAATCTCTCAGAGAGGAGGAGGAGGGATAGAATCAATGAGAAGATGAGGGCACTGCAAGAGCTTATACCTCACTGTAACAAGTCAGACAAAGCATCGATGCTGGATGAGGCAATTGAATACTTAAAGTCACTTCAGTTACAAGTTCAGATAATGTGGATGGGGAGTGGGATGGCACCAATGATGTTTCCTGGCGTTCAACACTACATGTCACGAATGGGAATGGGAATGGGAATGGGTCCTGCTCCTATGCCTTCTATTCACAGTCCAATGCAATTACCAAGGGTCCCACTAGTTGATCAAGCTATATCTTCGGCACCCGCACCAAACCTGCCGGCTATGTGCCCTCCCCAAGTCTTAAATCCAGTTATTCAAAACCAGATGCAAAACCCCAATTTCCCCGAACCATATGCACGTTACATGGGCTTCCACCACATGCAAACTGCTCAGCCCATGAATATATTCAATTATGGTTCGCAGACAGTACAGCAGAGTCATAAGATAGCACAACCGAGCAGTAGTGGTGGACCATGCCATGGAGGAGCTCCAACCGAAAATACTTCAAGCGGCAAGTTGGGTAGATGCCCATTTTCAGGAAAAAATCCTAATTTTGACTGTAACAAAACCATAAGCTTTAATGTTCTAAGGTTAACAGGGTTATGTAAATTTGCAAATTCAGATGTCTATGAGAAGCTGTCGGTTAACCCATGA 1779 0.4547 MNYCVPNWNMEDDLLPAAIQNKSMGPDHELVELLWQNGQVVLHSQTHRKPSQTPNVSGQIQKPERPTTKGGVSFGNSSNLIQEDEMASWIQYPLEDSLDKELCSDFFYELTNSHPIEVEKPIKQCEGDRNAKYGASEETNVFITSSTERPQQPIFKQSNNPNFAENPMPPPRLQIPDMTQQDPNLGGVDRIVNFPHISRSVKAELGSSNGRIRGKGSVDVTRREFGESSVMTIGSSHCGSNQLPNEADFSRVSSNGLGATGMFAGPNKDDIRKVSSQCERGQTDTLEPTVTSSSGGSGGSFGGTGKQSTGNHSHKRKGRDADESESQSEEAEFESAEANKPPQRSGSGRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKSDKASMLDEAIEYLKSLQLQVQIMWMGSGMAPMMFPGVQHYMSRMGMGMGMGPAPMPSIHSPMQLPRVPLVDQAISSAPAPNLPAMCPPQVLNPVIQNQMQNPNFPEPYARYMGFHHMQTAQPMNIFNYGSQTVQQSHKIAQPSSSGGPCHGGAPTENTSSGKLGRCPFSGKNPNFDCNKTISFNVLRLTGLCKFANSDVYEKLSVNP* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01497 592 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 349 416 IPR036638 GO:0046983
Eupl06g01497 592 SMART finulus 358 407 IPR011598 GO:0046983
Eupl06g01497 592 CDD bHLH_AtPIF_like 352 415 IPR047265 -
Eupl06g01497 592 MobiDBLite consensus disorder prediction 278 309 - -
Eupl06g01497 592 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 352 401 IPR011598 GO:0046983
Eupl06g01497 592 Coils Coil 319 339 - -
Eupl06g01497 592 Gene3D - 348 408 IPR036638 GO:0046983
Eupl06g01497 592 FunFam Basic helix-loop-helix transcription factor 347 410 - -
Eupl06g01497 592 Pfam Helix-loop-helix DNA-binding domain 356 402 IPR011598 GO:0046983
Eupl06g01497 592 MobiDBLite consensus disorder prediction 45 73 - -
Eupl06g01497 592 MobiDBLite consensus disorder prediction 260 367 - -
Eupl06g01497 592 MobiDBLite consensus disorder prediction 350 367 - -
Eupl06g01497 592 MobiDBLite consensus disorder prediction 524 549 - -
Eupl06g01497 592 PANTHER TRANSCRIPTION FACTOR PIF3 20 523 IPR044273 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01497 Eupl-Chr6 27613595 27618249 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01497 8 548 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 36.036 2.24e-56 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl06g01497 HLH 1.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01497 K16189 - psom:113287256 758.829