Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01472 ATGAATCTCTTGTTCAGGAAGTCTACTTCGATAGCTTCCATGGCATCGAAGCAAGCTCTTACTGCTTTGATATCCATAGAAGCTTTTCGTGTTGCTTCATCTGTCACAGTGGCTGAAGCTGTTACAAAATGTGGTGTTTTAGGCGGTGAAGTTCGTTCGTTCTCATCTTCTAGGACACCAGAGAAGCTCGGATTCTTCAGTCTTCGTGTTAGAGATTTTCATTCCTCGACTGGTCCATTAAAATTTAGGGCTTCTTCTGTTGCACAGGCAGAGTACGCACTCGACGATTTCTCGGACGAGGAGAAGTCTTCGGGGAAGGTCGGTGGAGATTGTGATGAGGGGCTTGAAATCTCAAAGCTTGGGATTTCTGAAGATATAGTTTCTGCATTGGCGAAAAAAGGAATCACGAAGCTCTTTCCAATACAGAAAGCTGTGCTGGAACCAGCAATGCAGGGGCGTGACATGATTGGTCGGGCTAGAACTGGAACGGGAAAGACTCTAGCTTTTGGCATTCCCATCATGGATAGAATCATTCAGTTCAATGCCAAGCATGGACGTGGAAGAAATCCTTTGGCTTTGGTTTTGGCTCCAACCAGAGAACTTGCTCGGCAGGTCGAGAAGGAATTTAATGAATCTGCCCCCAGCTTGGATACCCTGTGTGTTTATGGGGGTGTGCCCATATCACATCAAATGAATACACTCGATCATGGTGTTGATGTAGTTGTTGGTACGCCTGGTCGAATTATTGATCTGCTTAAGAGAGGTGCATTGGTTTTGTCAGAGGTCCAGTTTGTTGTTCTCGATGAGGCTGATCAGATGCTTGCCGTGGGATTTGATGAAGATGTTGAAATAATTTTAGAAAAGTTACCCCAGAAGCGCCAGAGCATGATGTTCTCTGCCACAATGCCAATTTGGATAAGAAAGCTTACCCAGAAGTACCTCAAAGATCCATTAACTATTGATCTTGTGGGAGATTCCAATCAGAAGTTGGCAGCAGGAATTACCCTCTATTCAATTGCATCAGACAGGTTTGGGAAGGCGTCGATTATCGGGCCTCTCATATCAGAACACGCAAAAGGAGGGAAAAGCATTGTTTTCACTCAAACAAAACGTGATGCCGATCAGCTGGCATATTCTATGCAACGCAAGTTTAAATGTGAAGCTTTGCATGGGGATATCTCGCAAAATCAGAGGGAAAGGACTCTTTCTGGCTTTCGAGATGGGCACTTCAATATCTTAGTTGCTACTGATGTTGCTGCTCGTGGGCTTGATGTACCTAATGTTGATCTTGTGATCCATTATGAGCTTCCAAGCACATCGGAGATCTTTGTTCATAGATCTGGTCGAACAGGACGTGCTGGGAAAAAAGGTAGCGCCATTCTCATTCATACAGAACAGCAGAGCAGGGCTGTCAGGGTCATTGAACAAGATGTGGGATGCAAGTTCAAAGAGCTCCCTAGGATTGCTGTTCAGGGTGGAAATCAGGACATGTTTGATGACATGGGAGGCGGTGGTCGACGAGGTGGTCATCTGAGCGATTCTGGTTTTGGTCGCTCTGGTGGTTCTGGATTTGGTCGTTCTGGTGGATCTGGTTCAAGCCGTTTTGGTTCTTTTGGTGGTTCGAGTTCAGGTCGATCTGGCGGTGAGTATGGCAGTTCTGGTCCCAGTCGTTCAAGTAACTTTGGTGGCTCTGGGTTTGGTCGTTCAGGTGGATTCGGTGAATTTCGTAGTTCAGGTCGTTCCAGTAGTTTAGGAGACTTTGGTGGTTCAGGTCGTTCCAGGGGTTTTGGGAACTTCAACTCAGGTCATTCTAGTGGATTTGATAATTCCAATTCAAGCCGTTTCAGTGAGTTTGAGTTTAGTCGTTCAGGTTGA 1875 0.4587 MNLLFRKSTSIASMASKQALTALISIEAFRVASSVTVAEAVTKCGVLGGEVRSFSSSRTPEKLGFFSLRVRDFHSSTGPLKFRASSVAQAEYALDDFSDEEKSSGKVGGDCDEGLEISKLGISEDIVSALAKKGITKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDRIIQFNAKHGRGRNPLALVLAPTRELARQVEKEFNESAPSLDTLCVYGGVPISHQMNTLDHGVDVVVGTPGRIIDLLKRGALVLSEVQFVVLDEADQMLAVGFDEDVEIILEKLPQKRQSMMFSATMPIWIRKLTQKYLKDPLTIDLVGDSNQKLAAGITLYSIASDRFGKASIIGPLISEHAKGGKSIVFTQTKRDADQLAYSMQRKFKCEALHGDISQNQRERTLSGFRDGHFNILVATDVAARGLDVPNVDLVIHYELPSTSEIFVHRSGRTGRAGKKGSAILIHTEQQSRAVRVIEQDVGCKFKELPRIAVQGGNQDMFDDMGGGGRRGGHLSDSGFGRSGGSGFGRSGGSGSSRFGSFGGSSSGRSGGEYGSSGPSRSSNFGGSGFGRSGGFGEFRSSGRSSSLGDFGGSGRSRGFGNFNSGHSSGFDNSNSSRFSEFEFSRSG* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01472 624 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 475 IPR027417 -
Eupl06g01472 624 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 146 320 IPR014001 -
Eupl06g01472 624 MobiDBLite consensus disorder prediction 493 624 - -
Eupl06g01472 624 CDD SF2_C_DEAD 334 462 - -
Eupl06g01472 624 Pfam DEAD/DEAH box helicase 139 305 IPR011545 GO:0003676|GO:0005524
Eupl06g01472 624 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 349 493 IPR001650 -
Eupl06g01472 624 Pfam Helicase conserved C-terminal domain 348 454 IPR001650 -
Eupl06g01472 624 SMART ultradead3 134 337 IPR014001 -
Eupl06g01472 624 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 115 143 IPR014014 GO:0003724
Eupl06g01472 624 SMART helicmild6 374 454 IPR001650 -
Eupl06g01472 624 MobiDBLite consensus disorder prediction 575 624 - -
Eupl06g01472 624 MobiDBLite consensus disorder prediction 525 565 - -
Eupl06g01472 624 FunFam ATP-dependent RNA helicase RhlE 108 323 - -
Eupl06g01472 624 Gene3D - 344 497 IPR027417 -
Eupl06g01472 624 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 116 491 - -
Eupl06g01472 624 CDD DEADc 126 321 - -
Eupl06g01472 624 Gene3D - 116 324 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01472 Eupl-Chr6 26926397 26947615 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01472 120 486 Eukaryotic Initiation Factors Gene Family AT3G19760 34.054 5.27e-64 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01472 - - nnu:104598327 803.512