Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01471 ATGCAGAGCCAGCTTGTGTGTAATGGGTGTAGGAGCATTCTTCTTTATCCTAGAGGAGCTACAAATGTTTGCTGTGCAATATGCAATACAATTACCTCAGTCCCACCTCCAGGAATGGATATGTCTCAGCTCGTGTGTGGAGGTTGCCGGACATTGCTAATGTATACGCGTGGGGCGACAAGTGTGAGATGCTCCTGCTGCCACACAATTAACCTTGCAAGACCAGCATCTAATCAAGTCGCACATGTGAACTGTGGTCAGTGCCACACAATGCTTATGTATCCGTATGGAGCACCATCAGTCAAATGCGCAGTGTGTCATTATGTTACGAACATTGGGGTGGGTAACATGAGGGTGCCAATACCTGTGCATAGACCCAATGGAGCTACCATGCCCTCATCTTCTACTATGCCACATTCCCACAGTCAAACCGTTGTTGTCGAGAACCCTATGTCATTAGACGAAAGCGGCAAATTGGTAATTCTTCTCCTTCCTTATCTGGAAACTCCATTGTTCTTTAAATAA 525 0.461 MQSQLVCNGCRSILLYPRGATNVCCAICNTITSVPPPGMDMSQLVCGGCRTLLMYTRGATSVRCSCCHTINLARPASNQVAHVNCGQCHTMLMYPYGAPSVKCAVCHYVTNIGVGNMRVPIPVHRPNGATMPSSSTMPHSHSQTVVVENPMSLDESGKLVILLLPYLETPLFFK* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01471 174 Pfam LSD1 zinc finger 85 109 IPR005735 -
Eupl06g01471 174 Pfam LSD1 zinc finger 7 31 IPR005735 -
Eupl06g01471 174 Pfam LSD1 zinc finger 46 70 IPR005735 -
Eupl06g01471 174 SUPERFAMILY Multiheme cytochromes 21 108 IPR036280 -
Eupl06g01471 174 NCBIfam zinc finger domain, LSD1 subclass 4 34 IPR005735 -
Eupl06g01471 174 NCBIfam zinc finger domain, LSD1 subclass 82 111 IPR005735 -
Eupl06g01471 174 NCBIfam zinc finger domain, LSD1 subclass 43 72 IPR005735 -
Eupl06g01471 174 PANTHER PROTEIN LSD1 2 160 IPR040319 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Eupl06g01471 zf-LSD1 9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01471 - - nnu:104598348 296.204