Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01469 ATGGATAGTTCGGGACCTGAATTGCGACCTGCTGAGGAATCATTGCAAGAGTTTTCCGATCGTCAGGCAAGTAAACAAAATGATAGAAGTGGAGAAATCTCCACAGTTCAGCATTCAAGGCGGCCAAACCTCTCCTCATTGGAAATACCAGCAAGGTCCCTGGAAAATACATTGCCTAGTTCTGCAAGAATCGACATTTCTTCACTACCAAGTCCCAGTTCTACGAGAGCAGGCTTGCCCCCAAGACCAAGTTCTGCAAAGTTGAAACCTTCTGTGAGAAATCTGCTTCCGCAGCGGAGCGTTAAGATGAAAAATTTGTCCCAGGAAGGTGAGAAGACAGTTCTTCTTATCCCAGAGACACCACCTTCGGAAGGTCCAGTGGAAAAACCTTCTACTTCAAGGTCATTTTCTCTGACCAAGGTTTTCGGCTCTTCATCGTCAAAAAGAACATACTCTTTACCCGTTACACCGGTTGCGAGTTCTTGTCCTGAGACTGTGCAAGAAAGACATCTGGATGATCGGTCCGATTTTTCTAAATCAGAAGTGCAGCAGCATATAACACGCTCGCTATCAGTTCCCGTGAATGTTAAAACCAGAAGCTTAGGGCGGATGCATTCTATGGGAGTGATCCGTGTAATTTCAGCAACCCCTCGTCCTGCAGTGGTTGATGGTGTCTTACCAAATGATGCCCCAACAACAGATACTGCAACCGAAGATGCTGGTGAAGATATTCCTGAAGAAGAAGCAGTATGCAGAATTTGTTTTGTTGAGCTTGCGGAAGGAGGTGAGACTCTTAAGATGGAGTGTAGTTGCAAAGGGGAACTTGCACTTGCACACCAAGAGTGTGCAGTGAAATGGTTTAGCATTAAGGGTAACAAGACATGTGACATTTGCAAGCAAGATGTTAAAAATCTACCTGTTACATTATTGAGAATACAGACTGCGCAGACTGTTAATAGACAACCAGCAACTATAACACAGGAAAGGGAAGTTACTCGTTACAGGGTCTGGCAGGATGTGCCAGTTCTTGTCATGGTCAGCATGCTTGCCTATTTCTGCTTTCTGGAGCAACTCCTGGTGTCTGATATGCACTCCCGTGCTCTTGCCATATCATTGCCTTTCTCTTGTGTTTTAGGTCTCCTTTCATCCATGATAGCTTCTACAATGGTAAGCAAGAGTTACATTTGGGCTTATGCTTCCTTCCAGTTTGCAATCGTGATCCTGTTTGCTCATATCTTCTACGCTGTACTCAACGTAAACGCAATTCTCTCTGTCCTTCTTTCGTCGTTCACTGGGTTTGGGATTGCAATCAGCACGAATTCTCTGCTTGTGGAGTACTTGAGATGGAGAATGAACCGAAATCTGCAATCTTCTCGTCAGCAAAACAACAGAGGTGGACGACAGCAGCAGCAACAACAGAGAGAGAATCTCAATGTGAGAACAACGGATAGTGCCAGGCAGCAAGAAACAAGGGTGGAGAACACCAATACCCCACATGGATAA 1503 0.4518 MDSSGPELRPAEESLQEFSDRQASKQNDRSGEISTVQHSRRPNLSSLEIPARSLENTLPSSARIDISSLPSPSSTRAGLPPRPSSAKLKPSVRNLLPQRSVKMKNLSQEGEKTVLLIPETPPSEGPVEKPSTSRSFSLTKVFGSSSSKRTYSLPVTPVASSCPETVQERHLDDRSDFSKSEVQQHITRSLSVPVNVKTRSLGRMHSMGVIRVISATPRPAVVDGVLPNDAPTTDTATEDAGEDIPEEEAVCRICFVELAEGGETLKMECSCKGELALAHQECAVKWFSIKGNKTCDICKQDVKNLPVTLLRIQTAQTVNRQPATITQEREVTRYRVWQDVPVLVMVSMLAYFCFLEQLLVSDMHSRALAISLPFSCVLGLLSSMIASTMVSKSYIWAYASFQFAIVILFAHIFYAVLNVNAILSVLLSSFTGFGIAISTNSLLVEYLRWRMNRNLQSSRQQNNRGGRQQQQQQRENLNVRTTDSARQQETRVENTNTPHG* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01469 500 SUPERFAMILY RING/U-box 247 302 - -
Eupl06g01469 500 MobiDBLite consensus disorder prediction 13 27 - -
Eupl06g01469 500 CDD RING_CH-C4HC3_MARCH 251 299 - -
Eupl06g01469 500 MobiDBLite consensus disorder prediction 1 91 - -
Eupl06g01469 500 Pfam RING-variant domain 251 298 IPR011016 GO:0008270
Eupl06g01469 500 PANTHER OS02G0165000 PROTEIN 21 468 - -
Eupl06g01469 500 SMART ringv_2 250 299 IPR011016 GO:0008270
Eupl06g01469 500 MobiDBLite consensus disorder prediction 223 242 - -
Eupl06g01469 500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 306 IPR013083 -
Eupl06g01469 500 ProSiteProfiles Zinc finger RING-CH-type profile. 243 305 IPR011016 GO:0008270
Eupl06g01469 500 MobiDBLite consensus disorder prediction 28 80 - -
Eupl06g01469 500 MobiDBLite consensus disorder prediction 457 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01469 Eupl-Chr6 26815863 26867954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01469 245 331 C3H Transcription Factor Family AT2G37950 37.500 1.36e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01469 - - nnu:104589712 677.937