LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl06g01463	ATGAGTAACCATCGATTGGACATTGGGAAGCCTACCCCAGGTAGTTTGATGAGATTAAAAGAGCTATTGCTTAAAAGTGAGAACCGCGTTTGTGCAGATTGTGGTGCCCCAGATCCTAAATGGGCGTCAGCAAATATTGGAGTATTTATATGCTTAAAATGCTGTGGTGTGCACAGAAGTCTTGGTACACATATTTCAAAGGTTTTGTCCGTGACATTAGATGATTGGTCTGATGATGAAATTGACTCTATGGTTGAGGTTGGTGGAAATTCTTCTGCTAATGCAATTTATGAGGCCTTTGTTCCTGAAGGATTCTCAAAGCCTGTGCCAGAGTCGAGTCACGAGGAACGTACGAGATTCATCAGGTCTAAGTACGAGGTTCAAGAATTTTTGAAACCAAGCTTGCGGATTACTTCTGGAAGAAGCTCTCTCCAATCTAGTTTTTCTAGAAAGATTATGGATAGCTTTCGAAGTTCAGTCTCGTCAAAGAAAACGGAAGGGATGGTGGAATTTATTGGATTACTGAAGGTCAAAGTGATAAAGGGCACAAATTTAGCCATTAGAGATATGCTTACAAGTGATCCTTATGTTGTCTTGACGCTTGGGCAACAGAAGGTCCAGACACAAGTAATATCGAGCAACTTGAATCCTATTTGGAACGAGGAGCTCATGCTTTCGGTTCCTCAGCATTATGGGGCCCTGAAACTGAAAGTGTTTGATCATGACACCTTCTCGGCTGATGACATAATGGGGGAAGCCGAAGTTGATATCCAGCCACTGATCACGGCTGCGATGGCATTTGGAGATGCAAGAATGTTTGGAAACATGCAGATTGGAAAATGGCTAAAATCGCACGACAATGCTCTCATAAGAGACAGCATCATCAACATTGCAGATGGGAAGGTGAAAGAAGAAGTATCACTCAAGCTTCAGAATGTGGAATGTGGTGAAATTGATCTAGAATTAGAGTGGCTGCCTCTAGACCAATAG	990	0.4242	MSNHRLDIGKPTPGSLMRLKELLLKSENRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDDWSDDEIDSMVEVGGNSSANAIYEAFVPEGFSKPVPESSHEERTRFIRSKYEVQEFLKPSLRITSGRSSLQSSFSRKIMDSFRSSVSSKKTEGMVEFIGLLKVKVIKGTNLAIRDMLTSDPYVVLTLGQQKVQTQVISSNLNPIWNEELMLSVPQHYGALKLKVFDHDTFSADDIMGEAEVDIQPLITAAMAFGDARMFGNMQIGKWLKSHDNALIRDSIINIADGKVKEEVSLKLQNVECGEIDLELEWLPLDQ*	330

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl06g01463	329	FunFam	ADP-ribosylation factor GTPase-activating protein AGD12	171	329	-	-
	Eupl06g01463	329	Gene3D	Arf GTPase activating protein	10	137	IPR038508	-
	Eupl06g01463	329	Gene3D	C2 domain	172	329	IPR035892	-
	Eupl06g01463	329	SUPERFAMILY	ArfGap/RecO-like zinc finger	19	133	IPR037278	-
	Eupl06g01463	329	FunFam	Arf-GAP with dual PH domain-containing protein 1	14	139	-	-
	Eupl06g01463	329	SMART	C2_3c	174	269	IPR000008	-
	Eupl06g01463	329	CDD	C2_ArfGAP	172	316	-	-
	Eupl06g01463	329	PRINTS	HIV Rev interacting protein signature	68	89	IPR001164	GO:0005096
	Eupl06g01463	329	PRINTS	HIV Rev interacting protein signature	28	47	IPR001164	GO:0005096
	Eupl06g01463	329	PRINTS	HIV Rev interacting protein signature	47	64	IPR001164	GO:0005096
	Eupl06g01463	329	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12	10	329	IPR044518	GO:0005096\|GO:0005543
	Eupl06g01463	329	SMART	arf_gap_3	17	138	IPR001164	GO:0005096
	Eupl06g01463	329	CDD	ArfGap	19	125	-	-
	Eupl06g01463	329	ProSiteProfiles	C2 domain profile.	154	270	IPR000008	-
	Eupl06g01463	329	Pfam	Putative GTPase activating protein for Arf	19	132	IPR001164	GO:0005096
	Eupl06g01463	329	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	13	130	IPR001164	GO:0005096
	Eupl06g01463	329	Pfam	C2 domain	173	261	IPR000008	-
	Eupl06g01463	329	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	169	266	IPR035892	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl06g01463	Eupl-Chr6	26477421	26502028	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl06g01463	1	329	C2H2 Transcription Factor Family	AT4G21160	74.260	0.0	528

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl06g01463	K12486		-	mof:131160248	541.576