Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01442 ATGGCGCTTTCGATGCATCATCACAAAGAATCATCGACGTCGTCATCGAAACAGATGGATTCGAGCAAGTATGTGAGGTATACGCCGGAGCAGGTGGAGGCGTTAGAGAGGGTATATACGGAATGCCCGAAGCCGAGCTCCATGAGAAGGCAGCAGCTTATAAGGGAGTGTCCTATACTCTCGAATATTGAGCCAAAGCAGATCAAGGTCTGGTTTCAGAATCGGAGATGCCGTGAAAAGCAGAGGAAAGAAGCATCCCGCCTCCAGACAGTAAACAGGAAGTTGACTGCCATGAACAAGCTGTTGATGGAGGAGAATGATCGTCTGCAGAAGCAGGTCTCGCAGTTGGTTTATGAGAATGGATACATGAAACAACAGCTGCATAATGCATCTGCAGTGACCACAGACACGAGCTGTGAGTCTGTGGTCACAAGTGGTCAGCACCAACAACAGCAAAACCCAACACCTCAGCATCCGCAAAGGGATGCTAACAACCCAGCTGGTCTCCTCGCGATAGCTGAGGAGACCCTGACAGAGTTCCTTTCCAAGGCCACTGGAACTGCTGTCGACTGGGTCCAGATGCTTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCACAATTGTAGTGGTGTTGCAGCGCGAGCCTGCGGTCTCGTGAGTTTAGAACCCATGAAGGTCGCTGAGATACTCAAAGATCGTCCATCGTGGTTTCGCGATTGCCGTTCCCTTGAGGTTGTGACTGTACTTCCTACAGGAAATGGAGGAACCATAGAACTTATATACATGCAGACTTACGCACCTACAACATTGGTATCGGCACGGGACTTTTGGACGCTGAGATATACTACGGGTTTGGAAGATGGCAGTCTTGTGATCTGTGAGAGGTCATTGACGCCTTCTACTGGTGGCCCAACGGGGCCACCTGCTCCAAATTTTGTAAGAGCTGAGATGCTTCCCAGTGGTTATCTTATCCGACCTTGTGAGGGTGGCGGCTCTATAATTCACATTGTTGATCATGTTGACTTGGATGCATGGAGTGTGCCTGAGGTTCTCAGGCCACTATATGAATCGCCCAAAATACTTGCTCAGAAAATGACAATTGCTGCATTGCGACACATAAGGCAGATTGCACAGGAGACAAGTGGTGAAATACATTATGGTGGTGGCCGTCAGCCTGCTGTATTACGGACATTTAGTCAGAGATTGTGCAGGGGGTTCAATGATGCTGTTAACGGATTTACGGACAATGGGTGGTCACCGATGGGTAGTGATGGCATGGAGGATGTCACCATTGTCATAAACTCCTCTCCAAGCAAACTTCTTGGTTCTCAAGGAAATTCTTCGACAATGCTCTCGACTTTAGGAGGTGGGGTACTATGCGCAAAGGCATCAATGCTGCTACAGAATGTGCCCCCTGCATTGCTTGTTCGCTTTCTGAGGGAGCATCGTTCTGAGTGGGCTGACTGTGGTGTTGATGCTTACTCTGCTGCGTCTTTAAAAGCTAGCCCTTATGCAGTTCCTGGTGCAAGACCAGGCGGCTTCCCCAGTAGTCAGGTCATCTTACCTCTTGCCCATACTGTGGAAAACGAGGAGTTCTTGGAGGTAATTCGTCTCGAAGGCACTGGGCTCTCCCAAGATGACACAGTTTTTTCACGGGACATGTTTTTATTACAGCTTTGCAGTGGGGTCGATGAGAATGCAGCTGGTGCCTGTGCTCAGCTTGTCTTTGCACCCATTGATGAATCCTTCGCTGATGATGCTCCGCTGCTACCATCGGGTTTCCGTGTTATACCATTAGATCCTAAAACGGATTGCCGTTCAGCAACACGAACTCTTGATTTAGCATCCACACTGGAAGTGGGACCTGGCGTAGCACGTCCGCCTGGTGAAACTGCAGCAAACAGTTATAACCTCAGGTCGGTGCTGACTATAGCGTTCCAGTTCACATACGAGAACCACTTTCGAGACAATGTGGCGGCCATGGCTCGGCAATATGTTCGAAGCGTTGTTGGGTCTGTTCAGAGAGTTGCCATGGCTATTGCCCCATCACAGTTGACCTCCCACATGGGGCCAAAACCACCACCTGGGTCTCCTGAGGCGCTTACCCTGGCGCGATGGATTTGTCGGAGCTACAGGTTCCACACTGGAGTAGAGCTCCTTCGTGTCAACTCCCAAGCCGGCGATTCCTTGTTGAAACAGCTGTGGCACCATTCTGATGCAATCATGTGTTGCTCCTTGAAGACAAATGCTTCTCCAGTTTTCACCTTCGCAAATCAGGCAGGTCTCGACATGCTTGAGACCACACTTGTGGCCCTTCAAGATATAATGCTTGACAAAATTCTTGACGAGACTGGCCGGAAGTCGTTGTGCTCCGAGTTCTCCAAGATAATGCAGCAGGGCTTTTCTTATCTGCCGGCGGGGATTTGTGTGTCCAGCATGGGGAGACCAGTGTCTTACGAGCAGGCCATCGCGTGGAAGGTCCTAAATGAGGAAGACTCCAATCACTGCTTGGCTTTCATGTTCATTAACTGGTCTTTTGTTTGA 2559 0.499 MALSMHHHKESSTSSSKQMDSSKYVRYTPEQVEALERVYTECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYMKQQLHNASAVTTDTSCESVVTSGQHQQQQNPTPQHPQRDANNPAGLLAIAEETLTEFLSKATGTAVDWVQMLGMKPGPDSIGIVAVSHNCSGVAARACGLVSLEPMKVAEILKDRPSWFRDCRSLEVVTVLPTGNGGTIELIYMQTYAPTTLVSARDFWTLRYTTGLEDGSLVICERSLTPSTGGPTGPPAPNFVRAEMLPSGYLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESPKILAQKMTIAALRHIRQIAQETSGEIHYGGGRQPAVLRTFSQRLCRGFNDAVNGFTDNGWSPMGSDGMEDVTIVINSSPSKLLGSQGNSSTMLSTLGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADCGVDAYSAASLKASPYAVPGARPGGFPSSQVILPLAHTVENEEFLEVIRLEGTGLSQDDTVFSRDMFLLQLCSGVDENAAGACAQLVFAPIDESFADDAPLLPSGFRVIPLDPKTDCRSATRTLDLASTLEVGPGVARPPGETAANSYNLRSVLTIAFQFTYENHFRDNVAAMARQYVRSVVGSVQRVAMAIAPSQLTSHMGPKPPPGSPEALTLARWICRSYRFHTGVELLRVNSQAGDSLLKQLWHHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDETGRKSLCSEFSKIMQQGFSYLPAGICVSSMGRPVSYEQAIAWKVLNEEDSNHCLAFMFINWSFV* 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01442 852 SUPERFAMILY Homeodomain-like 22 85 IPR009057 -
Eupl06g01442 852 Coils Coil 92 119 - -
Eupl06g01442 852 CDD homeodomain 23 83 IPR001356 GO:0003677
Eupl06g01442 852 MobiDBLite consensus disorder prediction 138 164 - -
Eupl06g01442 852 Pfam START domain 172 379 IPR002913 GO:0008289
Eupl06g01442 852 CDD START_ArGLABRA2_like 166 382 - -
Eupl06g01442 852 CDD bZIP 75 114 - -
Eupl06g01442 852 SMART START_1 171 381 IPR002913 GO:0008289
Eupl06g01442 852 Pfam MEKHLA domain 707 851 IPR013978 -
Eupl06g01442 852 ProSiteProfiles 'Homeobox' domain profile. 18 82 IPR001356 GO:0003677
Eupl06g01442 852 SMART HOX_1 20 86 IPR001356 GO:0003677
Eupl06g01442 852 MobiDBLite consensus disorder prediction 138 162 - -
Eupl06g01442 852 MobiDBLite consensus disorder prediction 1 24 - -
Eupl06g01442 852 FunFam homeobox-leucine zipper protein ATHB-15 207 388 - -
Eupl06g01442 852 SUPERFAMILY Bet v1-like 172 383 - -
Eupl06g01442 852 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 18 852 IPR044830 GO:0003700
Eupl06g01442 852 Pfam Homeodomain 23 81 IPR001356 GO:0003677
Eupl06g01442 852 ProSiteProfiles START domain profile. 162 390 IPR002913 GO:0008289
Eupl06g01442 852 FunFam Homeobox-leucine zipper protein REVOLUTA 23 78 - -
Eupl06g01442 852 Gene3D - 205 388 IPR023393 -
Eupl06g01442 852 Gene3D - 13 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01442 Eupl-Chr6 25804654 25815974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01442 1 852 Homeobox Transcription Factor Family AT2G34710 78.271 0.0 1359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Eupl06g01442 START 2.9e-53 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01442 K09338 - ming:122069518 1508.81