Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01441 ATGACATCTTCTGTGCATGATCTGTCATCTCATTCTGATGATAGTGGAACTGATGAGCATCAAAAGCAGTCAGACCCTCAGATCCAACATCAGTCCCCTGCAAGTGGAATCTTTCATCCTGGCGTGGCATCGCAGTCTGCTGAGTACATGATGCCTCCTCATCTTGAAGTGGGACATGCTGTGGCCCAAGCAGCGTATCCATATCCAGACCCCTACTACAGAAGCATCTTTGCTGCCTATGGTGCACAACCTATGATTCACCCTCATTTGATGGGAATCCAACAAGCTGGAGTTCCATTGCCATCGGATGCAGTTGAGGAGCCTGTGTATGTCAATGCAAAGCAATATCATGGTATCTTGAGACGCCGACAATCTCGTGCCAAAGCTGAGTCAGAAAATAAATCGATCAAGTCTCGTAAGCCCTATCAACATGAATCTCGACACTTGCATGCCTTGAGAAGAGCTAGGGATGGTGGCGGTCGGTTTCGTAATGCCAAGACCAAGGAGAACCAACGGAGTGAGGTGGCAGCACATGAAAAAGGGAAGCCTAGTGACACTGCCAACGCGGATAAAGACCAAAATGCTCCCCCAGAAAGGGAAACCTAA 606 0.4851 MTSSVHDLSSHSDDSGTDEHQKQSDPQIQHQSPASGIFHPGVASQSAEYMMPPHLEVGHAVAQAAYPYPDPYYRSIFAAYGAQPMIHPHLMGIQQAGVPLPSDAVEEPVYVNAKQYHGILRRRQSRAKAESENKSIKSRKPYQHESRHLHALRRARDGGGRFRNAKTKENQRSEVAAHEKGKPSDTANADKDQNAPPERET* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01441 201 Gene3D - 105 167 - -
Eupl06g01441 201 SMART cbf3 104 165 IPR001289 GO:0003700|GO:0006355
Eupl06g01441 201 MobiDBLite consensus disorder prediction 11 25 - -
Eupl06g01441 201 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 13 188 IPR001289 GO:0003700|GO:0006355
Eupl06g01441 201 MobiDBLite consensus disorder prediction 122 201 - -
Eupl06g01441 201 ProSitePatterns NF-YA/HAP2 subunit signature. 110 130 IPR018362 GO:0003677|GO:0016602
Eupl06g01441 201 MobiDBLite consensus disorder prediction 148 201 - -
Eupl06g01441 201 ProSiteProfiles NF-YA/HAP2 family profile. 105 165 IPR001289 GO:0003700|GO:0006355
Eupl06g01441 201 MobiDBLite consensus disorder prediction 123 142 - -
Eupl06g01441 201 PRINTS CCAAT-binding transcription factor subunit B signature 139 162 IPR001289 GO:0003700|GO:0006355
Eupl06g01441 201 PRINTS CCAAT-binding transcription factor subunit B signature 108 130 IPR001289 GO:0003700|GO:0006355
Eupl06g01441 201 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 107 162 IPR001289 GO:0003700|GO:0006355
Eupl06g01441 201 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01441 Eupl-Chr6 25738846 25776999 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01441 1 180 CCAAT-HAP2 Transcription Factor Family AT1G30500 57.692 5.65e-58 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Eupl06g01441 CBFB_NFYA 1.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01441 K08064 - psom:113312585 260.381