Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01434 ATGCTGGGTGGGTTGTATGGCGACCTGCCGCCCCCTTCGTCTGCACCCTCAGCCGATGAGGAGAAGAGCAGCAGCAACTCCGCAGTGTGGTCGAGCAGCGCCAAAATGGCACCGCCAACGTTGCGCAAGCCGTCGTCTCTCTTTGCTCAACCTCAGTCGGTCTTGAAAACTCAACAGTCGCAAACCAAACCCAAAACCCTAAATTCATCCCAGCCCAAGCCCCTAACTTCGTCAACTGCTTTGGTGGCGGCGGCATCGTTGCCCGATGATGGGGTGAGGAGCCCATCGTTTCAACAACCCGCCCTCGTTGGTGTCACGTCGACGGTCATTGAAGAGTATGATCCTGCGAGGCCTAATGATTACGAGGACTACAGGAGGGAACGGAAGAGACGGGCTATGGAGGCTGAGATGAAGAAAGAGCTTGAAAGAAGGCGGCAGGAGGAGGAGGAGAGAGAGAGGGTGCGTGAACAGAGAGAGCGAGAGGCGGCAGAAAGAGAAAAGGAGAGGGATTACAATGACTCGAGAACGTCATCGTTGAATATCTCAGGAGAAGAAGCTTGGAAACGACGGGCAGCTATAAGTGGGAATTTGGGTGGAGCCCCACCAAGGTCGCCTTCTCCACCGCCTAATGGAGATGGGTTTAGCATTGGGAAGTCAGGAACTGTTGGGCTAGGCGTTGGTGCAGGTGGGCAGATGACTGCTGCACAAAGAATGATGGCGAAGATGGGGTGGAAAGAAGGGCAGGGACTTGGGAAGCAGGAGCAGGGGATTACTACTCCCCTAATGGCGAAGAAGACAGATAGACGAGCTGGGGTGATTGTGAATGCTAGCGAATCTAGATCAGAGAAGAAGGCTAAGAGCGTTAACATTAATGGCCCACCTACTCGTGTTCTCCTGCTCCGTAATATGGTGGGGCCTGGGGAGGTGGATGACGAGCTAGAAGACGAGGTAGCATCAGAGTGCGCAAAGTATGGGACAGTGACTCGGGTCCTCATATTTGAGATTACAGAGCCGGATTTCCCAGCAGATGAGGCTGTTAGGATCTTTGTGCAGTTTGAGAGGTCAGAGGAGACGACAAAAGCACTTGTTGATCTCGACGGTCGGTTCTTTGGGGGAAGGGTGGTGCACGCCACATTCTACGACGAGGAGAGATTTGGAAAGAATGAGCTGGCTCCGGTACCCGGAGAAATCCCTGGTTACACTTGA 1206 0.5381 MLGGLYGDLPPPSSAPSADEEKSSSNSAVWSSSAKMAPPTLRKPSSLFAQPQSVLKTQQSQTKPKTLNSSQPKPLTSSTALVAAASLPDDGVRSPSFQQPALVGVTSTVIEEYDPARPNDYEDYRRERKRRAMEAEMKKELERRRQEEEERERVREQREREAAEREKERDYNDSRTSSLNISGEEAWKRRAAISGNLGGAPPRSPSPPPNGDGFSIGKSGTVGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASESRSEKKAKSVNINGPPTRVLLLRNMVGPGEVDDELEDEVASECAKYGTVTRVLIFEITEPDFPADEAVRIFVQFERSEETTKALVDLDGRFFGGRVVHATFYDEERFGKNELAPVPGEIPGYT* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01434 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 382 IPR000504 GO:0003723
Eupl06g01434 401 Gene3D - 295 381 IPR012677 -
Eupl06g01434 401 SMART G-patch_5 229 275 IPR000467 GO:0003676
Eupl06g01434 401 SMART rrm2_1 297 378 IPR003954 GO:0003676
Eupl06g01434 401 MobiDBLite consensus disorder prediction 135 174 - -
Eupl06g01434 401 Coils Coil 124 173 - -
Eupl06g01434 401 PANTHER SPLICING FACTOR 45 SPF45 1 392 IPR040052 GO:0045292
Eupl06g01434 401 FunFam Putative splicing factor 45 295 381 - -
Eupl06g01434 401 Pfam G-patch domain 234 273 IPR000467 GO:0003676
Eupl06g01434 401 SUPERFAMILY RNA-binding domain, RBD 299 384 IPR035979 GO:0003676
Eupl06g01434 401 MobiDBLite consensus disorder prediction 135 219 - -
Eupl06g01434 401 ProSiteProfiles G-patch domain profile. 231 277 IPR000467 GO:0003676
Eupl06g01434 401 CDD RRM_UHM_SPF45 294 390 IPR034653 -
Eupl06g01434 401 MobiDBLite consensus disorder prediction 45 82 - -
Eupl06g01434 401 PIRSF SPF45 3 397 IPR040052 GO:0045292
Eupl06g01434 401 MobiDBLite consensus disorder prediction 17 34 - -
Eupl06g01434 401 MobiDBLite consensus disorder prediction 1 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01434 Eupl-Chr6 25478842 25489212 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01434 237 272 C2H2 Transcription Factor Family AT5G26610 61.111 5.85e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01434 K12840 - msin:131220764 566.229