Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01429 ATGGAGGACCCCGAAGGAGTTCTCAGCTTCGACTTCGAAGGCGGCCTCGACACGGGTCCCGCCAATCCCTCTGCTTCCGTACCCTTGATCCCGACCGACTCTTCTATTGCTGTATCCGGTAACCCCGCGGCGGGTCCATCCGTGGCTGCCGAGCCGTACCCCGGAAACCATACCGGCCGTAGAAGTTTTCGGCAGACGGTGTGCCGGCACTGGCTCCGGAGTCTATGCATGAAGGGAGACGCTTGTGGATTCCTCCACCAGTACGATAAATCGCGGATGCCAGTCTGTCGCTTCTTTCGGTTGTATGGAGAATGTCGCGAGCAAGATTGCGTGTACAAGCACACGAATGAAGATATCAAAGAGTGTAACATGTATAAGTTAGGTTTTTGTCCAAATGGCCCTGATTGCCGGTATAGACATGCAAAGCTGCCTGGACCTCCACCTCCTGTGGAAGAAGTCTTTCAGAAGATTCAGCATCTGAGTTCATTCAATTATGGCTCCTCGAACAGGTTTTTTCAACACAGGAATGCCGGTTATAGCCAACAAACAGAAAAGTCTCAGTTTCCACAAGGTTCTAACCCTATCAATCAAGGTGTAGCAGTAAAACAATCTACAACGGCAGAGTCCCCCAATATGCAGCAGCAGCAGCAATCACAAGTTCAGCAGCCTCAACAACAGCTGATTAACCAGACTCAGATGCAAAATCTTCCCGATGGTTTGCCAAATCAAGCCAACAGAACTGCTTCACCACTTCCTCAAGGATTATCTAGGTATTTTATTGTTAAAAGTTGCAATCGCGAAAATTTGGAACTATCCGTACAGCAAGGAGTATGGGCAACTCAAAGGAGCAATGAGGCTAAACTAAACGAAGCTTTTGACTCTGCAGAGAATGTCATTTTGATTTTTTCAGTCAACCGAACTCGCCATTTTCAGGGATGCGCAAAGATGACATCAAAAATTGGTGGATTTGTTGGAGGAGGAAACTGGAAATATGCACATGGAACTGCACATTATGGACGGAATTTCTCGGTTAAATGGTTAAAGCTATGTGAGTTGTCCTTTCATAAAACTCGTCATTTGAGGAACCCATACAATGAGAACTTACCAGTGAAGATAAGTCGAGACTGCCAGGAGCTGGAGCCCTCCATCGGCGAGCAGTTAGCATCCCTGCTTTATCTTGAGCCGGATAGTGAACTTATGGCAATCTCAGTCGCAGCAGAATCAAAACGGGAGGAGGAGAAAGCTAAAGGAGTCAATCCAGATGATGGGGCTGAGAACCCCGACATTGTCCCTTTTGAGGACAATGAAGATGAGGAAGAGGAAGAAAGTGAGGAAGAGGAGGAGAGCTTCAGCCAGGCTCTTGGTGCAGGCCAGGGCAGAGGAAGGGGAAGAGGAATGATGTGGCCCCCACACATGCCACTAGCTCGTGGTGGGAGACCGATGCCTGGGGTCCGTGGCTTCCCACCTGTCATGATGGGTGCCGATGGATTTACTTACGGGGCCGTTACACCTGAGGGATTCCCCATGCCAGACATTTTTGGCGTGGCTCCCCGTGTTTTTGCACCCTACGGGCCGAGGTTTCCCAGCGACTTCGCTGGCATGGGTCAAAGTTCAGCAATGGGCTTCACTCCTATAGACGGAACAGGTCCAACATCCGGTATGGTGTTTCACGGTCGACCTTCCCAGCCTGGAGCTGTCTTTCCCAACGGCGGACTCGGGATGATGATGGGTCAGGGGCGGGCTCCATTCATGGGTGGGATGGGTATGGTGGGTACAGCCCCCGTTCGAGCCAATAGGCCAATTGGTTTGCCACAGTTCCGTCAACCACCACCACTGCCACCCCCACAGAACAATCGGGTGGTAAAGAAAGATCAGAGGAGACCACTGAATGATAGGAATGACAGATACAGCGCAGGTTCAGATCAAGGAAAGGGTCAGGAGATAGCAGGTCCTGGTGGTGAACCCGATGATGACACAAAGTATCAGCCAGGCCTCAAGGCCCAACGTGAGGACTCATTTGGTGGCGGAAATAGCTTTAGAAATGATGAGAGTGAGAGTGAGGATGAGGCACCAAGGCGATCAAGACATGGGGAGGGGAAGAAGCGGCGAGGCTCAGTGGGAGATGGTGCTGCTGCCTCTGACCAGTGGGAGATGCCATTCCCCGAGCAGCAGAGCCAGTGA 2181 0.5117 MEDPEGVLSFDFEGGLDTGPANPSASVPLIPTDSSIAVSGNPAAGPSVAAEPYPGNHTGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVFQKIQHLSSFNYGSSNRFFQHRNAGYSQQTEKSQFPQGSNPINQGVAVKQSTTAESPNMQQQQQSQVQQPQQQLINQTQMQNLPDGLPNQANRTASPLPQGLSRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSAENVILIFSVNRTRHFQGCAKMTSKIGGFVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISVAAESKREEEKAKGVNPDDGAENPDIVPFEDNEDEEEEESEEEEESFSQALGAGQGRGRGRGMMWPPHMPLARGGRPMPGVRGFPPVMMGADGFTYGAVTPEGFPMPDIFGVAPRVFAPYGPRFPSDFAGMGQSSAMGFTPIDGTGPTSGMVFHGRPSQPGAVFPNGGLGMMMGQGRAPFMGGMGMVGTAPVRANRPIGLPQFRQPPPLPPPQNNRVVKKDQRRPLNDRNDRYSAGSDQGKGQEIAGPGGEPDDDTKYQPGLKAQREDSFGGGNSFRNDESESEDEAPRRSRHGEGKKRRGSVGDGAAASDQWEMPFPEQQSQ* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01429 726 SUPERFAMILY CCCH zinc finger 62 92 IPR036855 GO:0046872
Eupl06g01429 726 MobiDBLite consensus disorder prediction 178 197 - -
Eupl06g01429 726 ProSiteProfiles YTH domain profile. 256 391 IPR007275 GO:0003723
Eupl06g01429 726 MobiDBLite consensus disorder prediction 681 707 - -
Eupl06g01429 726 MobiDBLite consensus disorder prediction 406 421 - -
Eupl06g01429 726 MobiDBLite consensus disorder prediction 599 726 - -
Eupl06g01429 726 MobiDBLite consensus disorder prediction 406 470 - -
Eupl06g01429 726 Gene3D ph1033 like domains 240 394 - -
Eupl06g01429 726 Gene3D - 55 121 - -
Eupl06g01429 726 MobiDBLite consensus disorder prediction 202 226 - -
Eupl06g01429 726 FunFam Cleavage and polyadenylation specificity factor 30 kDa subunit 57 118 - -
Eupl06g01429 726 MobiDBLite consensus disorder prediction 651 665 - -
Eupl06g01429 726 SMART c3hfinal6 90 116 IPR000571 GO:0046872
Eupl06g01429 726 SMART c3hfinal6 118 142 IPR000571 GO:0046872
Eupl06g01429 726 SMART c3hfinal6 62 88 IPR000571 GO:0046872
Eupl06g01429 726 CDD YTH 257 391 IPR007275 GO:0003723
Eupl06g01429 726 Pfam YT521-B-like domain 256 318 IPR007275 GO:0003723
Eupl06g01429 726 Pfam YT521-B-like domain 335 390 IPR007275 GO:0003723
Eupl06g01429 726 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 26 698 IPR045168 -
Eupl06g01429 726 ProSiteProfiles Zinc finger C3H1-type profile. 116 143 IPR000571 GO:0046872
Eupl06g01429 726 MobiDBLite consensus disorder prediction 620 638 - -
Eupl06g01429 726 MobiDBLite consensus disorder prediction 427 449 - -
Eupl06g01429 726 ProSiteProfiles Zinc finger C3H1-type profile. 62 89 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01429 Eupl-Chr6 25282450 25325192 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Eupl06g01429 YTH 1.1e-18 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01429 K14404 - nnu:104585866 1155.97