Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01411 ATGAGGCTCTCTTCGTCCGGTTTCACTCATCAGACGCAGGAAGGAGAAAAGAGATGTCTGAATTCTGAGCTTTGGCATGCATGTGCTGGCCCTCTTGTTTCTCTACCTGCTGTCGGAAGTCGTGTAGTTTACTTTCCCCAGGGTCACAGTGAGCAGGTAGCTGCATCAACCAACAAAGAAGTTGATGCCCATATCCCTAATTATCCAAACTTACCTCCGCAATTGATCTGCCAGCTTCACAATGTGACTATGCATGCAGACGTGGAGACAGATGAAGTATATGCACAGATGACATTGCAACCGCTAAGTCCGCAAGAGCAGAAGGATGCCTATCTACCTGCGGAGTTGGGAACCCCAAGCAAACAGCCAACCAATTATTTCTGTAAAACATTGACTGCAAGTGATACTAGTACTCATGGAGGATTCTCTGTTCCTCGACGAGCAGCTGAAAAGGTCTTTCCTCCATTGGATTTCTCTCAGCAGCCTCCTGCTCAAGAGTTGATTGCAAAGGATCTTCATGGTAATGAGTGGAAATTCAGACATATTTTTCGCGGTCAGCCCAAGAGGCATCTTCTTACGACAGGGTGGAGTGTTTTTGTTAGTGCAAAAAGACTTGTTGCTGGTGATTCAGTTCTTTTTATCTGGAATGAAAAGAATCAGTTACTCCTGGGAATCCGGCGTGCTAATCGGCCTCAAACTGTGATGCCCTCGTCAGTTCTATCAAGTGACAGCATGCATATAGGGCTCCTTGCAGCCGCAGCTCATGCGGCTGCAACAAATAGTCGCTTCACTATATTTTATAACCCAAGGGCTAGTCCATCAGAATTTGTCATACCTCTGGCCAAGTATGCAAAAGCAGCCTATCACACCCGGGTTTCTGTTGGCATGCGTTTCCGAATGCTGTTTGAGACAGAAGAGTCGAGCGTTCGTCGGTACATGGGCACAATTACTGGCATAGGTGACTTAGATCCAGTTCGCTGGCAGAACTCACATTGGCGCTCTGTGAAGGTTGGGTGGGACGAGTCAACCGCAGGGGAGAGGCAGCCAAGAGTATCACTGTGGGAGATTGAACCTTTAACAACATTTCCAATGTATCCATCTCCATTCCCCCTCAGACTTAAGAGACCATGGCCACCAGGGCTACCCACTCTCTATGGTGGCAAAGATGATGATCTGGGCATCAATTCTCCACTTATGTGGCTCCGAGGAGATGGTGGAGACAGGGGATTTGAATCTCTAAATTTCCAAGGAATTGGGGTTACACCATGGATGCAGCCAAGGCTTGATGCTTCCCTTCTTGGTATGCAACCCGAAATGTACCAAGCAATGGCTGCTGCAGCGCTTCAGGAAGTGAGGACCGTGGATCCTTGTAAACCGTCACCAGCATCCCTTCTGCAATTCCAGCAATCCCAGAATGTTCCCGGATCTGCTTTAATGCAGAGGCAGATGTTGCAGCAGTCTCAACCTCAACACGCGTTTCTTCAAAATATTCAAGAAAACCAGTCACAGACTCAGGCTCGGGCTCATCTTTTTCCACAACAGTTACAGCAACGCCACCCGTTTAATGATCAACAGCCACAGCCACGACAGCAGCAGCAGCAGCAGCAGCAACAACAATTTTCCGATCAACATATTCCAAATGTTGTTTCTGCACTATCTCAGCTTGCTTCGTCATCTCAGTCCCCGTCTCCATCTATACAGACCATCTCTTCACTGTGCCAGCAGCAGAACTTTCCAGACTCCAATGGGAACCCTGTAACCACATCTGGTCTTTCTCCCCTACATAGTCTTTTGGGCTCATTCTCCCAGGATGAAACGTCCCACCTGCTTAGCTTGCCAAGAATCAACCCACTAATCCCTTCTGCTCCCTGGTCAGCCAAGCGAGTTGCGGTTGAATCTCTGCTCCTTCCTGGAGTGGCTCAGTGTGTTATTCCCCAGGTGGAACAGTTCGGCACACCACAGGCTAATGTATCACAACATTCTATCTCATTGCCACCTTTTCCTGGTAGAGAATGCTCCGTGGACCAAGGTAGCACGGATCCCCAAAGCCATCTTCTGTTTGGGGTTAATATAGATTCCTCATCACTTCTAATGCAAAATGGGATGTCAGGCCTCAGGTGTGTTGGCAGCGAGAGTGACTCAACAGCCATGCCATTTGCTGCTTCTAGTTTTGTGAGTGCCACAGGCACTGATTTCCCACTTAACCCATCCATGACAACTTCCAGTTGCTTAGATGAATCAAGTTTTCTTCATTCTCCGGAGAATGGGAGCCAAGTGAACCCACCAACCAGAACCTTTGTCAAGGTTCACAAGTCAGGGTCCTTTGGGAGGTCACTGGATATCACTAAGTACAGCAGCTACAATGAGCTGCGCAGTGAGCTTGCTCGCTTGTTTGGCCTCGAAGGCCAGTTGGAGGACCATCAGAGATCAGGCTGGCAGCTTGTATTCGTCGACCGGGAGAACGATGTTCTCCTTCTCGGCGATGACCCTTGGCCGGAGTTTGTAAACAACGTGTGGTGTATCAAGATACTCTCGCCACAGGAAGTGCAGCAGATGGGCAGACAAGGGCTTGAACTTCTGAACTCAGTCCAGAGGCTTTCCAATGGAAGCTGTGACGACTATGTGAACGAACGGGACTCCAAAAATCTGAGCTCTGGGATCACGTCGGTGGGGTCTCTGGACTACTAA 2688 0.4888 MRLSSSGFTHQTQEGEKRCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPQEQKDAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYAKAAYHTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPTLYGGKDDDLGINSPLMWLRGDGGDRGFESLNFQGIGVTPWMQPRLDASLLGMQPEMYQAMAAAALQEVRTVDPCKPSPASLLQFQQSQNVPGSALMQRQMLQQSQPQHAFLQNIQENQSQTQARAHLFPQQLQQRHPFNDQQPQPRQQQQQQQQQQFSDQHIPNVVSALSQLASSSQSPSPSIQTISSLCQQQNFPDSNGNPVTTSGLSPLHSLLGSFSQDETSHLLSLPRINPLIPSAPWSAKRVAVESLLLPGVAQCVIPQVEQFGTPQANVSQHSISLPPFPGRECSVDQGSTDPQSHLLFGVNIDSSSLLMQNGMSGLRCVGSESDSTAMPFAASSFVSATGTDFPLNPSMTTSSCLDESSFLHSPENGSQVNPPTRTFVKVHKSGSFGRSLDITKYSSYNELRSELARLFGLEGQLEDHQRSGWQLVFVDRENDVLLLGDDPWPEFVNNVWCIKILSPQEVQQMGRQGLELLNSVQRLSNGSCDDYVNERDSKNLSSGITSVGSLDY* 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01411 895 Gene3D - 125 228 IPR015300 -
Eupl06g01411 895 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Eupl06g01411 895 FunFam Auxin response factor 125 229 - -
Eupl06g01411 895 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Eupl06g01411 895 SUPERFAMILY CAD & PB1 domains 755 838 - -
Eupl06g01411 895 Pfam AUX/IAA family 760 849 IPR033389 -
Eupl06g01411 895 FunFam Auxin response factor 759 853 - -
Eupl06g01411 895 Gene3D - 291 363 - -
Eupl06g01411 895 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Eupl06g01411 895 ProSiteProfiles PB1 domain profile. 764 848 IPR000270 GO:0005515
Eupl06g01411 895 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 853 IPR044835 GO:0003677|GO:0006355|GO:0009725
Eupl06g01411 895 MobiDBLite consensus disorder prediction 520 590 - -
Eupl06g01411 895 CDD B3_DNA 126 227 IPR003340 GO:0003677
Eupl06g01411 895 SMART B3_2 127 229 IPR003340 GO:0003677
Eupl06g01411 895 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Eupl06g01411 895 FunFam Auxin response factor 291 363 - -
Eupl06g01411 895 Gene3D - 761 853 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01411 Eupl-Chr6 24783743 24800595 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01411 1 485 B3 DNA Binding Superfamily AT1G30330 85.102 0.0 837
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Eupl06g01411 AUX_IAA 6.6e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01411 - - nnu:104610814 1472.99