Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01402 ATGCCAGCAGCAGTCTACTCCCTCTGCTTCTCTCACAACAACTCACTACCAATCCAAAACACGCCAACAAACAATCTCTCAACAAAACCCAAAACCCTCCTCCAAAAGCTCCCAATCTCCTCAGACCAATTCAAGGAAAAAATCTTATGCCTTGAGATAATGGGTGTAGACTCAGGAAGAGCACTTTCCCTCAACCCATCTCTCCACACAACCACCCTTGACACCATTCACTCCATCATCTCTTTCCTACGATCCAAAGGCATCCATCAAAAGGATTTAGGCAGGATCTTTGGTATGTGCCCCAAAATCCTCACATCCAACATCAAACAAGACCTCACTCCTGTCTTTCATTTCCTATCCCAAGACCTAACTGTCCCATCTCACAACTTCAGGAAGGTTGTCAACAAATGTCCTAGATTACTGGCTTCTAGTGTAAGAGACCAGCTTAAACCAGCCCTCTTTTATCTTCAGAGACTTGGGTTCAAGGACATGGATGCTTTGGCTTATAGGGACTCGGTTTTGCTGGTGTCTAATGTGGAGAATACTCTAATTCCTAAGCTGGATTACTTGGTGAGCTTGGGGTACTCGCGTGAGGATGCTGTGGGGATGGTGGTGAGGTGCCCAGGGCTGTTCACTTTCAGTGTGGAGAACAATTTCAAGCCCAAGTTTGGGTACTTTGTTGGGGAGATGGAGGGGAGGTTGGAGGAGTTGAAGGAATTTCCTCAGTACTTTGCATTTAGTTTGGAGAAGAGGATAAAGCCTAGGCACATGGAGGTTATGAAGAGTGGGGTGAAGGTAGCTTTGCCACTAATGCTCAAGAGCACTGATGAGGAGTTTAGGGAGTTGATGAGGCATGGGGGTGGATGA 867 0.466 MPAAVYSLCFSHNNSLPIQNTPTNNLSTKPKTLLQKLPISSDQFKEKILCLEIMGVDSGRALSLNPSLHTTTLDTIHSIISFLRSKGIHQKDLGRIFGMCPKILTSNIKQDLTPVFHFLSQDLTVPSHNFRKVVNKCPRLLASSVRDQLKPALFYLQRLGFKDMDALAYRDSVLLVSNVENTLIPKLDYLVSLGYSREDAVGMVVRCPGLFTFSVENNFKPKFGYFVGEMEGRLEELKEFPQYFAFSLEKRIKPRHMEVMKSGVKVALPLMLKSTDEEFRELMRHGGG* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01402 288 PANTHER CGI-12 PROTEIN-RELATED 186 282 IPR003690 GO:0003690|GO:0006355
Eupl06g01402 288 FunFam Transcription termination factor MTEF1, chloroplastic 119 286 - -
Eupl06g01402 288 Pfam mTERF 73 165 IPR003690 GO:0003690|GO:0006355
Eupl06g01402 288 Pfam mTERF 174 279 IPR003690 GO:0003690|GO:0006355
Eupl06g01402 288 SMART mt_12 59 89 IPR003690 GO:0003690|GO:0006355
Eupl06g01402 288 SMART mt_12 201 233 IPR003690 GO:0003690|GO:0006355
Eupl06g01402 288 SMART mt_12 94 126 IPR003690 GO:0003690|GO:0006355
Eupl06g01402 288 SMART mt_12 234 265 IPR003690 GO:0003690|GO:0006355
Eupl06g01402 288 SMART mt_12 165 196 IPR003690 GO:0003690|GO:0006355
Eupl06g01402 288 SMART mt_12 131 162 IPR003690 GO:0003690|GO:0006355
Eupl06g01402 288 Gene3D Transcription termination factor 3, mitochondrial 121 285 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01402 Eupl-Chr6 24592388 24593413 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Eupl06g01402 mTERF 4.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01402 K15031 - nnu:104610235 440.269