Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01400 ATGGCTTCTCTGGCTTCCCTGGCGAGTTTGGGAAGCGCGAGAGTGAGTTCGTCAGGTTACTTTGAAGGTTCTCCCTCGCTAGTTCGGAGAATTCCAGTAATTAAGGGGTGCAGTTTCGGTAATTCTACAGGTGGATATAAATGGAGTTGCGTGTCGGTCTGTAAATGTATGGTCACGACAGATTTGATCACTGAGGAAGGGAATTCAGTTTCTCTGGAATCTACATTTAGAGGGAGCAAAGATGAGGATGGTGATCTTGTCCTCAAGCCTGCTCCCAAGCCTGTTTTGAGAGCCCGGGCCAAGGCTGAACCTCTACTAAATTTGAACACACAGAACTCGGTACCATGGGCCCCAATGCAACCCAGTGGGGACTCAGACGACGAAAAAGCAGAGAATGTTGAGGAAAGAAATAAGGTGATAGAGTCTCTTGGAGAGGTGTTGGAGAAGGCAGAGAAACTGGAAATCACTACTCCAGGAAAATTGGATAGTAATGAAAATAGTGGGGTTGGTAGTAAGCCAGCACCTGGTACAAGTCCTAACCCAAGAATGGGTAGACCAGACAATACGACCCCAACTCGGAAGTCTAAAACTTTGAAGAGTGTGTGGCGGAAAGGGAATCCAGTTGCCAGCGTGCAAAGGGTTGTTAAGGATACTCCTAAGACCACTACTCTTGAGAAAGAGGATACTAAGACAGAGGTGGAGAAGGAAGAAGCTCGACCTCATGCTCCTCTGAGACCTCCTCAGCCATCTCCTAGAGTTCAACCAAGGCTACAAGCAAAACCTGCTGTAGCTCCTCCACCTGCTGTAATCAAGAAACCTGTTGTCTTGAAAGATGTGGGAGCAGCTCCGCGGCCGATGGTTTCTGGTGACACAGAACCCAGTTCAAAAACCAGAGAGCGGAAGCCAATCCTAATAGACAAGTTTGCACCAAAGAAAGCGGTGGTTGACCCTCTGATTGCTCAGGCAGTTATACCGCCTCCCAAACCGATGAAGAGCCCTGCCTCTTCGAAGGTTAAAGATGAGCATCGTAAGAAAGCTGGCACAGCTGGGGGTCTGCGGAGGCGTTTGGTTGATGATGCTGGGATTCCTGATGAGGAGACTTCAGAGCTCAATGTGTCTATTCGCGGTGCTACAGCAGTGAGGAAAGGGAGAAAATGGAATAAAGCGAGTCGGAAGGCGGCTAGGCTTCAGGCTGCTAAGGATGCAGCTCCTGTTAGAGTAGAAATTCTTGAGGTGGGGGGAGAAGGGATGTTGACGGAGGACTTGGCGTACAGCTTAGCTATCAGCGAAGGTGAAATTCTTGGGTCTCTATACTCGAAGGGGATTAAGCCTGATGGAGTGCAGACTCTGGACAAAGACATGGTCAAAATGGTCTGTAAAGAGTATGATGTGGAAGTTATAGATGCTGCCACTGTTGGAGTGGAAGAAATGGCGAGAAAGAAGGAAATTTTTGATGAGGAAGACCTGGACAAGCTAGAAGAAAGGCCTCCTGTTATTACTATAATGGGTCATGTGGATCATGGAAAGACGACCCTTTTGGATTATATTCGTAAGAGCAAGGTAGTTGCATCTGAAGCAGGTGGAATAACACAAGGAATTGGGGCATATAAGGTGCTCGTTCCTGTTGATGGCAAGCTTCAACCATGTGTTTTCCTCGATACACCTGGCCATGAGGCATTTGGTGCAATGAGAGCACGTGGAGCACGGGTGACTGACATTGCTATCATTGTGGTGGCTGCTGATGACGGGGTTCGTCCTCAAACAAACGAGGCAATAGCTCATGCCAAAGCAGCTGGGGTGCCAATCGTGATAGCTATAAATAAGATAGATAAGGATGGCGCTAATCCAGAACGAGTCATGCAAGAACTCTCTTCAGTTGGTCTAATGCCCGAAGATTGGGGTGGCGATGTCCCAATGATTCAGATCAGCGCTCTTAAAGGGGAGAAAGTGGATGATTTGTTGGAAACCGTCACGCTTGTCGCCGAGTTGCAAGAATTGAAGGCCAATCCACATAGAAATGCAAAAGGCACTGTCATTGAGGCGGGTCTTCATAAATCGAAAGGACCTGTAGCTACATTCATTGTGCAGAATGGCACCCTCAAGAGGGGGGATGTGGTAGTTTGTGGTGAAGCCTTTGGAAAGGTGCGGGCCTTATTCGATGACAGTGAAACTCGTGTCGATAAAGCTGGTCCTTCTACAGCTGTGCAGGTAATTGGCTTGAGCAATGTTCCAGTTGCTGGTGATGAATTTGAGGTTGTTGATTCCCTTGAAGTTGCACGTGAAAAGGCAGAGGCACGTGCAGAGTCGTTACGGGATGAAAGGATATCTGCAAAGGCTGGGGATGGGAAGGTTACACTTTCTTCCTTGGCGTCTGCAGTTTCAGCAGGAAAGCAGGCTGGATTAGATTTGCATCAGCTGAATATTATTTTGAAGGTTGATTTGCAGGGATCCATTGAGGCTATCAGACAAGCCCTTCAAGTGCTCCCACAGGATAATGTCACTTTGAAGTTCCTGTTGCAAGCAACAGGGGATGTAAACTCAAGTGATGTCGATCTTGCTATTGCTAGTAAGGGCATTATATTTGGATTCAATGTCAAAACACCAGGTTCAGTTAAGAGCTATGCAGACAACAAAGGTGTCGAGATTCGTCTGTACAGAGTCATCTATGAGCTCATTGATGACATGCGGAATGCAATGGAAGGACTCCTAGACCCCGTTGAGGAACAAGTACCAATTGGAGCAGCAGAAGTCCGGGCCATATTCAGCAGTGGCAGTGGTCGTGTTGCTGGATGCATGGTGACAGAAGGAAAAGTAGTGAAAGGCTGTGGAATTCGGATTGTTCGAAACGGGAAAACAGTCTATGTTGGTGTTCTTGATTCTCTGAGACGGGTGAAGGAAATGGTGAAAGAGGTTAATGCTGGACTAGAGTGTGGTATTGGCATGGATGATTTTCTTGATTGGGAGGTCGGGGATATTATTGAGGCCTATAACTCAGTGCAGAAGCAGCGGACGCTTGAAGAGGCATCTGCTTCAATGGCAGTTGCAGTGGCAGGATGTGAAAGGTGA 3066 0.4765 MASLASLASLGSARVSSSGYFEGSPSLVRRIPVIKGCSFGNSTGGYKWSCVSVCKCMVTTDLITEEGNSVSLESTFRGSKDEDGDLVLKPAPKPVLRARAKAEPLLNLNTQNSVPWAPMQPSGDSDDEKAENVEERNKVIESLGEVLEKAEKLEITTPGKLDSNENSGVGSKPAPGTSPNPRMGRPDNTTPTRKSKTLKSVWRKGNPVASVQRVVKDTPKTTTLEKEDTKTEVEKEEARPHAPLRPPQPSPRVQPRLQAKPAVAPPPAVIKKPVVLKDVGAAPRPMVSGDTEPSSKTRERKPILIDKFAPKKAVVDPLIAQAVIPPPKPMKSPASSKVKDEHRKKAGTAGGLRRRLVDDAGIPDEETSELNVSIRGATAVRKGRKWNKASRKAARLQAAKDAAPVRVEILEVGGEGMLTEDLAYSLAISEGEILGSLYSKGIKPDGVQTLDKDMVKMVCKEYDVEVIDAATVGVEEMARKKEIFDEEDLDKLEERPPVITIMGHVDHGKTTLLDYIRKSKVVASEAGGITQGIGAYKVLVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAIIVVAADDGVRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSVGLMPEDWGGDVPMIQISALKGEKVDDLLETVTLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFIVQNGTLKRGDVVVCGEAFGKVRALFDDSETRVDKAGPSTAVQVIGLSNVPVAGDEFEVVDSLEVAREKAEARAESLRDERISAKAGDGKVTLSSLASAVSAGKQAGLDLHQLNIILKVDLQGSIEAIRQALQVLPQDNVTLKFLLQATGDVNSSDVDLAIASKGIIFGFNVKTPGSVKSYADNKGVEIRLYRVIYELIDDMRNAMEGLLDPVEEQVPIGAAEVRAIFSSGSGRVAGCMVTEGKVVKGCGIRIVRNGKTVYVGVLDSLRRVKEMVKEVNAGLECGIGMDDFLDWEVGDIIEAYNSVQKQRTLEEASASMAVAVAGCER* 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01400 1021 MobiDBLite consensus disorder prediction 109 135 - -
Eupl06g01400 1021 MobiDBLite consensus disorder prediction 243 267 - -
Eupl06g01400 1021 MobiDBLite consensus disorder prediction 182 196 - -
Eupl06g01400 1021 NCBIfam small GTP-binding protein domain 496 657 IPR005225 GO:0005525
Eupl06g01400 1021 Gene3D - 491 669 IPR027417 -
Eupl06g01400 1021 MobiDBLite consensus disorder prediction 150 267 - -
Eupl06g01400 1021 FunFam Translation initiation factor IF-2 907 1004 - -
Eupl06g01400 1021 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 494 667 IPR000795 GO:0003924|GO:0005525
Eupl06g01400 1021 MobiDBLite consensus disorder prediction 324 355 - -
Eupl06g01400 1021 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 484 670 IPR027417 -
Eupl06g01400 1021 MobiDBLite consensus disorder prediction 219 242 - -
Eupl06g01400 1021 SUPERFAMILY Translation proteins 909 1003 IPR009000 -
Eupl06g01400 1021 FunFam Translation initiation factor IF-2 802 907 - -
Eupl06g01400 1021 CDD mtIF2_IVc 913 995 - -
Eupl06g01400 1021 Hamap Translation initiation factor IF-2 [infB]. 12 1003 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Eupl06g01400 1021 SUPERFAMILY Translation proteins 671 753 IPR009000 -
Eupl06g01400 1021 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 801 913 IPR036925 -
Eupl06g01400 1021 NCBIfam translation initiation factor IF-2 418 1005 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Eupl06g01400 1021 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 208 1010 IPR015760 -
Eupl06g01400 1021 FunFam Translation initiation factor IF-2 670 788 - -
Eupl06g01400 1021 PRINTS GTP-binding elongation factor signature 566 577 IPR000795 GO:0003924|GO:0005525
Eupl06g01400 1021 PRINTS GTP-binding elongation factor signature 602 611 IPR000795 GO:0003924|GO:0005525
Eupl06g01400 1021 PRINTS GTP-binding elongation factor signature 498 511 IPR000795 GO:0003924|GO:0005525
Eupl06g01400 1021 PRINTS GTP-binding elongation factor signature 550 560 IPR000795 GO:0003924|GO:0005525
Eupl06g01400 1021 FunFam Translation initiation factor IF-2 491 669 - -
Eupl06g01400 1021 MobiDBLite consensus disorder prediction 159 174 - -
Eupl06g01400 1021 CDD IF2_mtIF2_II 674 768 IPR044145 -
Eupl06g01400 1021 ProSitePatterns Initiation factor 2 signature. 956 978 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Eupl06g01400 1021 Gene3D Translation factors 670 786 - -
Eupl06g01400 1021 Gene3D Translation factors 907 1004 - -
Eupl06g01400 1021 Gene3D - 802 906 IPR036925 -
Eupl06g01400 1021 Pfam Elongation factor Tu GTP binding domain 499 659 IPR000795 GO:0003924|GO:0005525
Eupl06g01400 1021 CDD IF2_eIF5B 497 663 - -
Eupl06g01400 1021 Coils Coil 753 780 - -
Eupl06g01400 1021 Pfam Translation-initiation factor 2 800 895 IPR023115 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01400 Eupl-Chr6 24537872 24558626 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01400 477 893 Eukaryotic Initiation Factors Gene Family AT1G76810 28.916 2.98e-29 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01400 K02519 - nnu:104610805 1550.03