Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Eupl06g01332 | ATGGATATCAGCGAAGAAGCCATGGCAGCTCACAGGCGAACTTTTATGGAGTTCTTGGATCAAGATGTAGGGAAGGGCATCTACATGCAAGCCATTAGAGACATGATAGGTCTAAAGCGTCGTCGTCTCATCATCGACCTCTCTGATCTCCATGACTTCAACACCGACTTAACTCGAAGGCTCCTTAAGAACCCTAGCGAATACATGCAGCCGTTCTCCGATGCGCTTACAGAAGTGACTCGCAACATCGATCCAAAGTACCTAAAAGAAGGAGAGCAAGTCCTCGTCGGCTTTGAAGGTCCCTTTGTTTCCAGAAGAGTCACACCAAGAGATCTTCTATCTTCCTTCATTGGCTCCATGGTCTGCGTCGAGGGCATCGTTACCAAATGCTCTCTTGTACGGCCAAAGGTTGTTAAAAGTGTTCATTTCTGCTCTGTAACTGGTGCTTTCACAACCCGTGAGTATCGAGACATTACATCCAATATGGGCTTGCCAACGGGGTCCGTGTATCCTACACGGGATGACAGTGGAAACTTGTTGGTGACCGAGTTCGGATTGTGCAAGTACAAAGATCATCAAACATTGTCCATGCAAGAGGTGCCTGAGAATTCAGCCCCTGGTCAGCTTCCACGAACCGTGGATATTATAGTGGAGGATGACCTGGTGGATTCGTGCAAGCCAGGAGACCGTGTAGCAATTGTAGGGACATATAAAGCTATTTCTGGAAAAAGCAAGGGCAGTGTGAATGGAGTATTCAGGACTGTCCTCATAGCTAACAATGTTTCTCTACTCAACAAAGAGGCAAATGCGCCAATCTACACTACCGAAGACTTAAAAAACATAAGAAAGATAGCTGAGAGAGATGATACATTTGATTTACTTGGTAATTCACTTGCACCGTCTATATATGGGCATTCATGGGTAAAGAAAGCAGTGATTTTGCTGATGCTTGGTGGAATCGAGAAGAACTTAAAAAATGGGACCCACTTAAGAGGTGACATAAACATGATGATGGTGGGCGATCCTTCTGTTGCCAAGTCTCAACTCTTAAGAGCAATCATGAATATTGCCCCTTTGGCCATATCAACAACAGGGCGTGGTTCTTCTGGTGTTGGCTTGACAGCAGCTGTTACTTCTGACCAGGAAACGGGAGAAAGAAGGCTAGAGGCTGGTGCAATGGTTCTTGCCGATCGAGGTGTTGTTTGCATTGATGAGTTTGACAAGATGAATGATCAAGATCGTGTTGCCATCCACGAAGTTATGGAGCAGCAGACTGTAACTATTGCTAAAGCTGGTATTCATGCTTCACTAAATGCTCGTTGCAGTGTAGTTGCTGCTGCAAATCCTATTTATGGGACTTATGATCGTTCAATTACTCCAACAAAAAATATTGGACTCCCAGACTCTTTGCTTTCTCGTTTCGATTTGCTATTTATCGTGTTGGATCAAATGGATCCTGAGATTGACCGTCAAATCTCGGAGCATGTCTTACGCATGCATCGATATCGTTCGGCAGTAGATGGTGGCGGGCCAGCACTTGATGGGAGTTCAAGGTATGGAAGAGAAGATGATGCTGATGCCAATTCATCTGTGTTTGTCAAGTATAACCGCATGCTACACGGGAAGAAAACTGAAAGGGGGCGCAAGCGTGATACCCTCACCATCAAGTTTCTTAAAAAGTATATTCATTATTCGAAGCATAGGATCCAGCCAGAGTTGACAGATGAGGCATCTGATCAAATTGCAACTGCATATGCAGAGCTTAGGAATGCCAGTTCAAATGCAAAGTCTGGAGGAGGAACGCTTCCAATCACTGCCAGGACCTTAGAGACCATAATACGTCTCTCAACTGCTCATGCCAAATTGAAGTTGAGCAAAAAGGTTACAAAGACTGATGTTGACGCTGCTCTTAAAATTCTAAACTTTGCCATCTATCATAAAGAGTTGACAGAGATGGAGGACCGTGAGCAAGAAAGGGAAAAGGAGCTGGAGAGGAAACGGAATGCTGACCATGCTGGTCGCAACAATGATAGAGCTGATCATGGTGGCACTGCTACAACGGGCGGTGCAACATCAGATGCGATGGAAGTTGATGACCCTCCTGCGGCCCAATCCAGTTCCGATATTTCTCCAGAAAGAATAGAAGCTTTTGGTTCTGTATTCGGTCAGCATATGCGGGCGAATCACTTGGAACTCATATCTATTGCAGAGATTGAGAAAGTTGTCAACATTGGGGCAGCTGTACTTTACACGAGGCCAGAGATAATATCCTTATTGGAGAGATTGCAAGAAGATAATAGATTGATGATAGTTGACGAAATGGTGCATATGATGTGA | 2337 | 0.4489 | MDISEEAMAAHRRTFMEFLDQDVGKGIYMQAIRDMIGLKRRRLIIDLSDLHDFNTDLTRRLLKNPSEYMQPFSDALTEVTRNIDPKYLKEGEQVLVGFEGPFVSRRVTPRDLLSSFIGSMVCVEGIVTKCSLVRPKVVKSVHFCSVTGAFTTREYRDITSNMGLPTGSVYPTRDDSGNLLVTEFGLCKYKDHQTLSMQEVPENSAPGQLPRTVDIIVEDDLVDSCKPGDRVAIVGTYKAISGKSKGSVNGVFRTVLIANNVSLLNKEANAPIYTTEDLKNIRKIAERDDTFDLLGNSLAPSIYGHSWVKKAVILLMLGGIEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSITPTKNIGLPDSLLSRFDLLFIVLDQMDPEIDRQISEHVLRMHRYRSAVDGGGPALDGSSRYGREDDADANSSVFVKYNRMLHGKKTERGRKRDTLTIKFLKKYIHYSKHRIQPELTDEASDQIATAYAELRNASSNAKSGGGTLPITARTLETIIRLSTAHAKLKLSKKVTKTDVDAALKILNFAIYHKELTEMEDREQEREKELERKRNADHAGRNNDRADHGGTATTGGATSDAMEVDDPPAAQSSSDISPERIEAFGSVFGQHMRANHLELISIAEIEKVVNIGAAVLYTRPEIISLLERLQEDNRLMIVDEMVHMM* | 779 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Eupl06g01332 | 778 | MobiDBLite | consensus disorder prediction | 652 | 710 | - | - | |
| Eupl06g01332 | 778 | MobiDBLite | consensus disorder prediction | 652 | 678 | - | - | |
| Eupl06g01332 | 778 | FunFam | DNA helicase | 136 | 190 | - | - | |
| Eupl06g01332 | 778 | Coils | Coil | 646 | 669 | - | - | |
| Eupl06g01332 | 778 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 470 | 478 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Eupl06g01332 | 778 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 391 | 405 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Eupl06g01332 | 778 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 419 | 432 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Eupl06g01332 | 778 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 331 | 346 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Eupl06g01332 | 778 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 443 | 455 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Eupl06g01332 | 778 | Pfam | MCM OB domain | 110 | 240 | IPR033762 | - | |
| Eupl06g01332 | 778 | Gene3D | - | 110 | 240 | IPR012340 | - | |
| Eupl06g01332 | 778 | Gene3D | - | 272 | 666 | IPR027417 | - | |
| Eupl06g01332 | 778 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 300 | 658 | IPR027417 | - | |
| Eupl06g01332 | 778 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 459 | 469 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Eupl06g01332 | 778 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 208 | 220 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Eupl06g01332 | 778 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 632 | 647 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Eupl06g01332 | 778 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 182 | 196 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Eupl06g01332 | 778 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 492 | 502 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Eupl06g01332 | 778 | ProSiteProfiles | MCM family domain profile. | 290 | 496 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Eupl06g01332 | 778 | SUPERFAMILY | Nucleic acid-binding proteins | 13 | 260 | IPR012340 | - | |
| Eupl06g01332 | 778 | Gene3D | - | 3 | 100 | - | - | |
| Eupl06g01332 | 778 | CDD | MCM3 | 293 | 643 | - | - | |
| Eupl06g01332 | 778 | Pfam | MCM P-loop domain | 278 | 500 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Eupl06g01332 | 778 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 9 | 666 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Eupl06g01332 | 778 | SMART | AAA_5 | 332 | 485 | IPR003593 | GO:0016887 | |
| Eupl06g01332 | 778 | Pfam | MCM N-terminal domain | 13 | 84 | IPR027925 | - | |
| Eupl06g01332 | 778 | Pfam | MCM AAA-lid domain | 557 | 641 | IPR041562 | - | |
| Eupl06g01332 | 778 | Gene3D | - | 136 | 190 | - | - | |
| Eupl06g01332 | 778 | FunFam | DNA helicase | 5 | 105 | - | - | |
| Eupl06g01332 | 778 | ProSitePatterns | MCM family signature. | 399 | 407 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Eupl06g01332 | 778 | SMART | mcm | 105 | 645 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Eupl06g01332 | Eupl-Chr6 | 22986798 | 22994384 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Eupl06g01332 | 1 | 576 | Core DNA Replication Machinery Family | AT5G46280 | 79.029 | 0.0 | 941 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Eupl06g01332 | K02541 | - | nnu:104585945 | 1328.92 |