Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01328 ATGGGAAAGAGAGCTCCGAAGCCGAAGAAGTCTCTCGCTGACTCTGCTTCTGCTGAAAAAACCACAAAAATGGCGGAGAAGAAAAACTTGTTGAAGCCAAAATCACCAGAAAAGATGAAGAGGACAACAAGGCAAATCAGAGATAGTGAGAAAGAACAGAAACCCAAATCACCGAAGAAGCCCAAAGCCAAGCCAAAGAAGAAAACGAAGAGAGAGGACGCCAACAAGCCCAAGAAGCCCGCAACTGCTTTCTTCTTCTTCTTGGAGGATTTTCGTAAGGGATACCAAGAACAGAATCCAGATGTCAAATCAATGCGTGATATTGGTAAGGCTTGTGGAGAAAAGTGGAAGACAATGACATATGAGGAAAAGGTTCAATACTATGATATAGCCACAGAAAAACGAGCAGAGTTTGATAAAGCCATGGCAGAATACATAAAGAGAAAGGAAAGTGGTGAAGATAAAGGAAGTGACGTGGATTCAGAGTTTGATGAGTACTAA 501 0.4212 MGKRAPKPKKSLADSASAEKTTKMAEKKNLLKPKSPEKMKRTTRQIRDSEKEQKPKSPKKPKAKPKKKTKREDANKPKKPATAFFFFLEDFRKGYQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYIKRKESGEDKGSDVDSEFDEY* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01328 166 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 77 146 IPR009071 -
Eupl06g01328 166 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 49 161 IPR031061 -
Eupl06g01328 166 SUPERFAMILY HMG-box 68 149 IPR036910 -
Eupl06g01328 166 CDD HMG-box_AtHMGB1-like 78 138 - -
Eupl06g01328 166 Gene3D High mobility group box domain 70 161 IPR036910 -
Eupl06g01328 166 SMART hmgende2 76 147 IPR009071 -
Eupl06g01328 166 Pfam HMG (high mobility group) box 77 145 IPR009071 -
Eupl06g01328 166 MobiDBLite consensus disorder prediction 1 78 - -
Eupl06g01328 166 MobiDBLite consensus disorder prediction 7 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01328 Eupl-Chr6 22781796 22792951 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Eupl06g01328 HMG_box 1e-17 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01328 - - nnu:104610200 210.69