Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01296 ATGGAGCAATCTACAGATTATTCATTCTCAGGTCCTTTCAAGATTCCACCAGCAAATATTCCTCAAAAAGTAGGAAGTGGTGCATGGGGAATTCCATCTGGATCTGATGCGCATCATGCATCAAATGATGCTAGCCTGTTTTCGACCTCATTACCTGTTCTTCCACATGAAAAGTTTAAATTTGCAGATTTGGAACATGATGGTCAATCTGTCGATGATGCCTCGTCTAGCTTAAATAAACTTCATAAAAACGTGGATAGTAAGGATTCTCCTGAAGATATTGGCTTGCATGCGATTGGAAGCCTGCTTCCTGACGACGAGGATGAACTTTTAGCTGGTATAATGGATGATTTTGACCTAAGTGGGCTGCCTAGTCAACTGGAGGACTTGGACGAGTATGATCTTTTTGGCAGTGGAGGGGGTATGGAATTGGACTTTGATACTCAGGACAGCTTGAGTATGGTTGCTGGGGAACATCCGTACGGGGAGCATCCTTCTAGAACATTATTTGTGCGGAATATCAATAGTAACGTCGAGGACTCGGAACTGAGAACTCTTTTTGAGCAATATGGTGCCATCAGGACTCTTTACACTGCATGCAAACATAGGGGCTTTGTGATGATATCTTACTATGATATCAGGGCTGCTCGAACCGCTATGCGTTCATTACAAAATAAGCCCCTAAGACGGAGAAAACTTGACATTCATTTTTCAATTCCGAAGGATAACCCATCAGACAAGGATATTAACCAAGGAACTCTTGTAGTTTTTAATTTGGATCCATCAGTTTCAAATGACGATCTCCGTCAAATATTTGGGGCTTACGGGGAAGTCAAAGAGATCAGGGAGACACCGCACAAGCGGCACCACAAGTTCATTGAGTTTTATGATGTCAGAGCCGCAGAAGCAGCCCTTAGGTCGTTAAATAGAAGTGACATAGCTGGGAAACGCATAAAACTTGAACCTAGCCGTCCTGGTGGAGCACGTCGAAACTTGATGCAGCAATTGAGTCAGGATCTGGATCAAGATGAAACCAGAAGTTTTCGACATCAAGTGGGTTCTCCGATAGCTAATTCTCCTCCAGGTAACTGGGCACAATTCAGCAGCCCGGTTGAGCATAGTCCTTTGCAAGCCCTTAGTCAATCTCCAGTTTTGGGAACTATTAGTCCTATTGACAACAACCATTTGCCTGGATTAGCTTCAATTCTGCCTCCTCTTGTATCAAACTCTCTGAAGATTGCACCTATTGGTAAGGACCAAGGAAGGGTGAGCCGTGTGGAAGGGTTCGCCAACACCAATTCAACACATGGTGCTGCATTTCAGCATTCTCATTCCTTTCCAGAGCCAAACCTGAGTGCAAGTCCTGGAACCGTATCTTCTTTTGGTCCATCTACTTCAAATACGTCTGGTATTGGGACATTGTCCGGGCCTCAGTTTCTCTGGGGCAGTCCCACTCCTTATTCAGAGCACACCAACTCTTCTGCGTGGCCAGCACCATCTATGAGACATCCGTTTACGTCCAACGGACAGGGGCAGGGCTTTCCTTACTCTAGTGTACATCCATCTCTTCTTGGTTCATCACACCACCATCATGTTGGATCTGCTCCATCTGGTGTTCCTTTTGAGAGGCACTTTGGCTATTTCCCGGATTCACCTGAAACGTCCTTCATGAGTCCTGTTGCTTATGGAGGCATGGGTTTAAGCCACAACGAAGGGAGTTTCATGATGAATATGGGTGCTCGTGCTGCTATGAGTGCTGGAGTTGCTCTTTCAGGAAACATGTCTGAAAATGGTTCGCCCAGTTTCAGAATGATGTCGTCCCCGAGGATGGGTCCTATGTTCCTTGGTGGTGGTCCATATCCAGGACCAGGAGCCAACACCATTGAAGGATTGGCTGAACGTGGACGGAGTCGGCGAGTTGAGAACAATGGGAACCAGATAGACAGCAAGAAGCAGTATCAGCTCGACTTGGATAAGATTGTTTGTGGGGAAGATACTCGGACTACTCTTATGATAAAAAACATACCAAATAAGTACACCTCAAAGATGTTACTGGCTGCCATTGATGAAAATCATAGGGGTACTTACGATTTTCTGTACTTGCCTATTGATTTTAAGAATAAATGCAACGTGGGTTATGCATTTATCAATATGGTGTCTCCTACGCACATTATTCCGTTTTATCAGGCATTCAATGGGAAGAAGTGGGAGAAGTTTAATAGTGAAAAAGTTGCTTCATTGGCATATGCTCGAATCCAGGGCAAGTCGGCCCTTGTTACCCACTTTCAGAATTCAAGTTTGATGAATGAAGATAAGCGTTGCCGGCCAATTCTCTTCCACTCAGAGGGCCCAGAGGCTGGTGATCTGATCATCCAAGAACCTTTCCCCTCCAACAATTTGAATATCCGTGTGCGTCAGCCAGATGGGTCTTACTTGGGGGATTCACCAGAAAGCCCTACAAAGGGTTATCTGGTTGAGAAACCAGACAAGAGTTAA 2496 0.4511 MEQSTDYSFSGPFKIPPANIPQKVGSGAWGIPSGSDAHHASNDASLFSTSLPVLPHEKFKFADLEHDGQSVDDASSSLNKLHKNVDSKDSPEDIGLHAIGSLLPDDEDELLAGIMDDFDLSGLPSQLEDLDEYDLFGSGGGMELDFDTQDSLSMVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGAIRTLYTACKHRGFVMISYYDIRAARTAMRSLQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRSLNRSDIAGKRIKLEPSRPGGARRNLMQQLSQDLDQDETRSFRHQVGSPIANSPPGNWAQFSSPVEHSPLQALSQSPVLGTISPIDNNHLPGLASILPPLVSNSLKIAPIGKDQGRVSRVEGFANTNSTHGAAFQHSHSFPEPNLSASPGTVSSFGPSTSNTSGIGTLSGPQFLWGSPTPYSEHTNSSAWPAPSMRHPFTSNGQGQGFPYSSVHPSLLGSSHHHHVGSAPSGVPFERHFGYFPDSPETSFMSPVAYGGMGLSHNEGSFMMNMGARAAMSAGVALSGNMSENGSPSFRMMSSPRMGPMFLGGGPYPGPGANTIEGLAERGRSRRVENNGNQIDSKKQYQLDLDKIVCGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPTHIIPFYQAFNGKKWEKFNSEKVASLAYARIQGKSALVTHFQNSSLMNEDKRCRPILFHSEGPEAGDLIIQEPFPSNNLNIRVRQPDGSYLGDSPESPTKGYLVEKPDKS* 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01296 831 CDD RRM1_MEI2_like 166 242 IPR034453 -
Eupl06g01296 831 FunFam Protein MEI2-like 1 251 346 - -
Eupl06g01296 831 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 169 233 IPR000504 GO:0003723
Eupl06g01296 831 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 319 IPR000504 GO:0003723
Eupl06g01296 831 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 167 240 IPR000504 GO:0003723
Eupl06g01296 831 SMART rrm1_1 669 745 IPR000504 GO:0003723
Eupl06g01296 831 SMART rrm1_1 253 321 IPR000504 GO:0003723
Eupl06g01296 831 SMART rrm1_1 168 236 IPR000504 GO:0003723
Eupl06g01296 831 CDD RRM3_MEI2_like 670 755 IPR034454 -
Eupl06g01296 831 Gene3D - 155 250 IPR012677 -
Eupl06g01296 831 Gene3D - 251 349 IPR012677 -
Eupl06g01296 831 SUPERFAMILY RNA-binding domain, RBD 243 350 IPR035979 GO:0003676
Eupl06g01296 831 CDD RRM2_MEI2_like 251 321 - -
Eupl06g01296 831 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 325 IPR000504 GO:0003723
Eupl06g01296 831 Pfam RNA recognition motif 2 667 763 IPR007201 -
Eupl06g01296 831 SUPERFAMILY RNA-binding domain, RBD 669 753 IPR035979 GO:0003676
Eupl06g01296 831 MobiDBLite consensus disorder prediction 806 831 - -
Eupl06g01296 831 PANTHER RNA RECOGNITION MOTIF-CONTAINING 44 793 - -
Eupl06g01296 831 SUPERFAMILY RNA-binding domain, RBD 158 250 IPR035979 GO:0003676
Eupl06g01296 831 FunFam MEI2-like protein 5 isoform 2 156 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01296 Eupl-Chr6 22063094 22083963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01296 169 339 Eukaryotic Initiation Factors Gene Family AT3G16380 24.457 7.59e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01296 - - nnu:104590542 1436.01