Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01287 ATGGAGAGCAGATTTCATGGCGTACACCCTCTCAAGAGATTCAAACTTCGGCAACAAGAAGAAAGAGATGAAAGCGTGAACTCATCACGTCTTCCAGCCAAGAAGAGAAAGGAATCATGGGATCCTCCCCCTTCCCCCAACACCACCATCATCACCACCTGTTGCTTGCCCGCCAAGAAGAGGGTTTGGGCTCTCCAGCCTCTCCATCCTCTCTACCTCAGCCCAGAAAAACCCATTTCGCTTTTCGATCTCAATGTCGAATACCAACAATCTCCCGAAAAAGAACCCCCCACATTGCAAAAGAGCCTGCTATTCCCCAGCAAGGACGGCGTTGATTCTGACTTTAAAGAGGAAGATGTAAATGGGGAAGATGATGTTGAAGAAGAAGAGGATGATGGGATCGTTTGTTGGGTTTGCCAGAGCACCGATGGAGATCCTTCAGACCCCATTGTACTCTGTGATGGATGTGATCTCATGGTCCACGCCACTTGTTATGGTGATCCCCTCATCCGGGGTATCCCCGAAGGCGACTGGTTCTGTGCCAGATGCCAAGTTTCTTCTCCTTCTCAAAAGGGGATAGTTAATGAGGACAACGCCGACTGTTGTTGCTGCCTCTGCCCGGTAAAGGGAGGGGCCATGAAACCCACCACCGATGGGCGATGGGCTCATATCTTGTGTGCGTTGTTAGTACCAGAAGTCTTCTTTCGGGATCCAGAAGGTAGAGAGGGCATCGATTGTTCACGGGTTCCTCGCAAAAGATGGGAAGAAGTCTGTTATGTTTGCAACTCTACGAGTGGGTGTGCAATCGGATGTTCAGAGCCCAAGTGCTCATTGGCCTTCCATGTTACTTGTGGGTTGAATGAAGAACTATGCATTGAATACAGAGAAGGAAGAACTGGAAGAGGAGGAGCGATCGTTGCTGGATTCTGCAAAACCCACACTGAGCTTTGGAAGAAGCAACAGCAGACTGGAAAGTTCAAAATTGTGGCCAGGGAGGAGCATAAGAAGTAA 1011 0.4936 MESRFHGVHPLKRFKLRQQEERDESVNSSRLPAKKRKESWDPPPSPNTTIITTCCLPAKKRVWALQPLHPLYLSPEKPISLFDLNVEYQQSPEKEPPTLQKSLLFPSKDGVDSDFKEEDVNGEDDVEEEEDDGIVCWVCQSTDGDPSDPIVLCDGCDLMVHATCYGDPLIRGIPEGDWFCARCQVSSPSQKGIVNEDNADCCCCLCPVKGGAMKPTTDGRWAHILCALLVPEVFFRDPEGREGIDCSRVPRKRWEEVCYVCNSTSGCAIGCSEPKCSLAFHVTCGLNEELCIEYREGRTGRGGAIVAGFCKTHTELWKKQQQTGKFKIVAREEHKK* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01287 336 Pfam PHD-zinc-finger like domain 203 298 - -
Eupl06g01287 336 MobiDBLite consensus disorder prediction 1 47 - -
Eupl06g01287 336 ProSiteProfiles Zinc finger PHD-type profile. 133 186 IPR019787 -
Eupl06g01287 336 ProSiteProfiles Extended PHD (ePHD) domain profile. 200 314 IPR034732 -
Eupl06g01287 336 ProSitePatterns Zinc finger PHD-type signature. 136 183 IPR019786 -
Eupl06g01287 336 PANTHER PHD FINGER PROTEINS 85 314 - -
Eupl06g01287 336 SMART PHD_3 135 184 IPR001965 -
Eupl06g01287 336 SMART PHD_3 257 314 IPR001965 -
Eupl06g01287 336 MobiDBLite consensus disorder prediction 1 41 - -
Eupl06g01287 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 316 IPR013083 -
Eupl06g01287 336 SUPERFAMILY FYVE/PHD zinc finger 124 187 IPR011011 -
Eupl06g01287 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 190 IPR013083 -
Eupl06g01287 336 CDD ePHD 203 313 - -
Eupl06g01287 336 Pfam PHD-finger 135 185 IPR019787 -
Eupl06g01287 336 MobiDBLite consensus disorder prediction 90 128 - -
Eupl06g01287 336 CDD PHD_BRPF_JADE_like 135 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01287 Eupl-Chr6 21866838 21868220 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01287 26 336 C2H2 Transcription Factor Family AT3G14740 54.348 1.28e-113 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Eupl06g01287 zf-HC5HC2H_2 2.4e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01287 K11380 - nnu:104608393 481.485