Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01271 ATGGGGAGAGGAAAGATTGAGATCAAGAGGATCGAAAACACGACCAACCGTCAGGTCACCTTCTGCAAGCGCCGCAATGGCCTACTCAAGAAGGCCTATGAGTTGTCTGTTCTTTGTGATGCCGAAGTAGCACTCGTCGTCTTCTCCAGCCGCGGTCGCCTCTATGAGTATTCCAACAACAGTGTAAAAACAACAATTGAGAGGTACAAGAAGGCCAGCGCAGATTCCTCTAACAATGGATATTTTTTGGAAGCCAATACTCAGTTCTACCAGCAAGAAGCCGCCAAACTGCGCAAAGATATTGGGAATATACAAAATGAGAACAGGAATTTGATGGGTGAGGGCCTTAGCTCTAAGAGTGTTAAGGAGTTGAAGCAACTAGAAAATAAATTAGAGAAAAGCATCAGCAGAATCCGATCCAAAAAGAACGAGTTGTTGTTTGCCGAGATCGAGTACATGCAGAGGAGGGAGATTGACTTGCAGAATGATAACATGTATTTCCGAGCAAAGATAGCTGAGAACGAGAAAGCCCAACAGCACATGAGCCTGATGGCAGGGAATGAATACGAGGTCATGACTTCTGCACCATTTGACTCTCGGAACTTCGTCCAAGTAAATCTAATGGAGCCCAATCACCATTACTCCCGCCCAGATCAAACAGCCCTCCAACTAGGTTGA 678 0.4572 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYSNNSVKTTIERYKKASADSSNNGYFLEANTQFYQQEAAKLRKDIGNIQNENRNLMGEGLSSKSVKELKQLENKLEKSISRIRSKKNELLFAEIEYMQRREIDLQNDNMYFRAKIAENEKAQQHMSLMAGNEYEVMTSAPFDSRNFVQVNLMEPNHHYSRPDQTALQLG* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01271 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Eupl06g01271 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Eupl06g01271 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 174 - -
Eupl06g01271 225 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Eupl06g01271 225 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Eupl06g01271 225 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Eupl06g01271 225 Coils Coil 121 144 - -
Eupl06g01271 225 Coils Coil 87 114 - -
Eupl06g01271 225 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Eupl06g01271 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Eupl06g01271 225 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Eupl06g01271 225 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Eupl06g01271 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Eupl06g01271 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Eupl06g01271 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Eupl06g01271 225 FunFam agamous-like MADS-box protein AGL11 13 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01271 Eupl-Chr6 21516826 21536743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01271 1 224 MADS-box Gene Family AT3G58780 65.948 4.40e-103 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Eupl06g01271 K-box 2.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01271 K09264 - nnu:104608408 363.229