Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01261 ATGAAGATCCAGTGTAATGCGTGTGAGACAGCAGAAGCTAACGTTCTCTGCTGCGCAGACGAAGCGGCTCTGTGTTGGGCTTGCGATGAGAAGGTTCATGCGGCGAACAAGCTTGCGAGCAAGCATCAGAGGGTTCCTCTGTCGAATTCGTCGTCGCAGATGCCGAAGTGCGATATTTGTCAGGAGAGTGTTGGCTACTTCTTCTGTCTGGAGGATCGTGCTTTGCTCTGTAGGAAGTGTGACGTCGCCGTACATACAGCAAACTCCTTCGTGTCTGGCCACCAGAGGTTTCTGCTTACTGGGGTGAAAGTGGGACTTGAACCCACAGTTCCAGTTGGGTCTTCTACTAAGGAGAAGTCGAATTCTGTTGAAAGAACTACAGAAAGGGCATTTCAATCAGTTTCTAAAAGGGGTACTTCAATGTCATTGACTGCTGAAACTAATGAATTGTTATCCCCCCAAGTCATTGGAGTTGGAGGTCTACCAGCGACTAAGATGTCATTTTCTGGGGGCACCACGACTGGAAGTCCTCCTGAGTGGGCTTTAGTAGATGATTTTCTTGGATATACAGATTTCAATCAAAATTATGGGTTCATGGAGCATGGATCTTCGAAGGCTGATAGCGGGAAGCTTGGAGATTCCGAATTCTCTCCAATTTCACGATCCACCATTGAAGATTTTGATGTAGATGAGTGCTTGGGCAAGGTGCCAGAGATCCCATGGATGGTGCCAGAGATCCCATCCCCACCCACAGCCTCCGGCCTCTTCTGGCCAAAAAACTTCCGGAATTCACCATCTGATGGTGCAGTTTTTGTTCCTGATATTAGCTGCACTTCACTGCAAAACATCCACCAAAATCAATCGAATGCCATCACCGCGAAACGCCGAAGGCAATATTAA 900 0.4789 MKIQCNACETAEANVLCCADEAALCWACDEKVHAANKLASKHQRVPLSNSSSQMPKCDICQESVGYFFCLEDRALLCRKCDVAVHTANSFVSGHQRFLLTGVKVGLEPTVPVGSSTKEKSNSVERTTERAFQSVSKRGTSMSLTAETNELLSPQVIGVGGLPATKMSFSGGTTTGSPPEWALVDDFLGYTDFNQNYGFMEHGSSKADSGKLGDSEFSPISRSTIEDFDVDECLGKVPEIPWMVPEIPSPPTASGLFWPKNFRNSPSDGAVFVPDISCTSLQNIHQNQSNAITAKRRRQY* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01261 299 MobiDBLite consensus disorder prediction 112 136 - -
Eupl06g01261 299 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Eupl06g01261 299 CDD Bbox1_BBX-like 5 47 - -
Eupl06g01261 299 SMART bboxneu5 52 99 IPR000315 GO:0008270
Eupl06g01261 299 SMART bboxneu5 4 47 IPR000315 GO:0008270
Eupl06g01261 299 MobiDBLite consensus disorder prediction 113 136 - -
Eupl06g01261 299 FunFam B-box zinc finger protein 22 1 93 - -
Eupl06g01261 299 SUPERFAMILY B-box zinc-binding domain 46 91 - -
Eupl06g01261 299 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 276 - -
Eupl06g01261 299 Gene3D Classic Zinc Finger 1 92 - -
Eupl06g01261 299 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Eupl06g01261 299 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Eupl06g01261 299 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Eupl06g01261 299 CDD Bbox1_BBX-like 56 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01261 Eupl-Chr6 21309618 21315802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01261 1 299 C2C2-CO-like Transcription Factor Family AT1G78600 47.892 1.34e-90 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Eupl06g01261 zf-B_box 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01261 - - psom:113309696 434.106