Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01248 ATGATTTCAGTGAAGCAGCTTTCTTCCAAATCAAAGCAAGGAAATCGTGAATTTGTGAATGAGATCGGCATGATTTCTGCACTTCAACACCCTAATCTTGTAAGGCTTTATGGATGTTGTATTGAAGGGAATCAATTATTGCTAGTATATGAATACTTGGAAAATAACAGCCTTGCCCGTGCTTTGTTTGGTCCAGAAGAAAGCCGACTGAAATTGGATTGGCCGACTCGACACAAGATCTGTGTTGGCATAGCAAGGGGTCTAGCTTATCTCCATGAAGAATCGAGACTGAAGATTGTTCACAGAGATATCAAGACTACAAATATACTGCTTGATAAGGATCTTAACCCTAAGATATCTGATTTTGGATTGGCAAAACTGGATGAAGAGGACAACACCCACATCAGTACTCGGATTGCTGGAACTTATGGATATATGGCACCGGAGTATGCAATGTGGGGTTACCTGACAGACAGAGCAGATGTTTATAGCTTCGGAGTTGTAACCCTTGAAATTGTAAGTGGTAGGAGCAACATAAATTTCAAGCCTAAAGCGGACAGTGTTTATCTTCTTGATTTGGCATTGGTTCTGCAAGAGAAAGGGAGTTTAATGGAGTTAGTGGATCCAAGGTTGGAAGAATTCAACGAGGAACAGGTTAGGGAGACGATCAATGTCGCCCTCCAGTGCACTAATGCATCTTCGACACTTAGGCCTATAATGTCTTCAGTGGTGAGCATGCTTGAAGGTCAAACAGTTGTTGAGGAGTTTGTTTCAAATCCAGGTACCTCCAGTGATGACTTGAAGTTTAAAGCCATCAGGAATCACTATCAACAGAGCCAAGATCGGAGTGTGGGCGAAAGCCAGACGCAGAGTATGTCGATGGCTGGGCCATCGACTACATCTTCCACATCTGCCATTGATCTCTACCCAATCAATATGGATTCCCAATATTTGATTCAAAGAGAGTAG 969 0.4252 MISVKQLSSKSKQGNREFVNEIGMISALQHPNLVRLYGCCIEGNQLLLVYEYLENNSLARALFGPEESRLKLDWPTRHKICVGIARGLAYLHEESRLKIVHRDIKTTNILLDKDLNPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMWGYLTDRADVYSFGVVTLEIVSGRSNINFKPKADSVYLLDLALVLQEKGSLMELVDPRLEEFNEEQVRETINVALQCTNASSTLRPIMSSVVSMLEGQTVVEEFVSNPGTSSDDLKFKAIRNHYQQSQDRSVGESQTQSMSMAGPSTTSSTSAIDLYPINMDSQYLIQRE* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01248 322 SMART serkin_6 1 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl06g01248 322 Gene3D Phosphorylase Kinase; domain 1 1 53 - -
Eupl06g01248 322 ProSitePatterns Serine/Threonine protein kinases active-site signature. 99 111 IPR008271 GO:0004672|GO:0006468
Eupl06g01248 322 Gene3D Transferase(Phosphotransferase) domain 1 54 260 - -
Eupl06g01248 322 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 286 - -
Eupl06g01248 322 ProSiteProfiles Protein kinase domain profile. 1 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl06g01248 322 SUPERFAMILY Protein kinase-like (PK-like) 4 249 IPR011009 -
Eupl06g01248 322 MobiDBLite consensus disorder prediction 278 305 - -
Eupl06g01248 322 Pfam Protein tyrosine and serine/threonine kinase 2 246 IPR001245 GO:0004672|GO:0006468
Eupl06g01248 322 CDD STKc_IRAK 2 249 - -
Eupl06g01248 322 FunFam Putative LRR receptor-like serine/threonine-protein kinase 53 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01248 Eupl-Chr6 20964842 20966385 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01248 1 307 Receptor kinase-like Gene Family AT1G07650 68.285 3.07e-148 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Eupl06g01248 PK_Tyr_Ser-Thr 6.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01248 - - nnu:104589772 505.368