Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01242 ATGGTGTCCGATCACACCTTTGCTCTCCTTCACTCCTACGTGGTGTCATCCTCTCCTTCTACGGCGCTATCCTCCTTTCCAAAGCTGAGAGGTCTAGACTTACAAACTGGTTCCTTTACTTTAAGGCAAATTAAGGCTGCTACGAACAACTTTGATGCTGTAAACAAGATTGGAGAAGGAGGTTTTGGACCCGTTTACAAGGGACATCTGTCAGATGGTACTATCATTGCAGTGAAGCAGCTTTCTTCCAAATCAAAGCAAGGAAATCGTGAATTTGTGAATGAGATAGGCATGATTTCTGCACTTCAACACCCTAATCTCGTAAGGCTTTATGGATGTTGTATTGAAGGGAATCAATTATTGCTAGTGTATGAATACCTGGAAAATAACAGCCTTGCCCGTGCTTTGTTTGGTCCAGAAGAAAGCCGACTGAATTTGGATTGGCGGACTCGGCACAAGATCTGTGTTGGCATAGCAAGGGGTCTAGCTTATCTCCATGAAGAATCGAGGCTAAAGATTGTTCACAGAGATATCAAAGCTACAAATGTACTGCTTGATAAGGAATTTAACCCTAAGATATCTGACTTTGGATTGGCGAAACTTGATGACGAGGACAACACTCACATCAGCACTCGAATTGCTGGAACTTATGGATATATGGCACCGGAGTATGCAATGTGGGGTTACCTGACTGACAAAGCAGATGTTTATAGCTTTGGAGTTGTAGCCCTTGAAATTGTTAGTGGTAGGAGCAACATAAATCACAGGCCTAAAGCGGACTGTGTATATCTTCTCGATTTGGCATTGGTTCTGCAAGAGAAAGGGAGTTTAATGGAGTTAGTGGATCCAAGGTTGGAAGAATATAACAAGGAAGAGGTTATGACGATGATTAATGTCGCTCTCCAATGCACTAATGCATCTTCGACACTTAGGCCTATAATGTCTACAGTGGTAAGCATGCTCGAAGGTCAAAACGTTGTTGAGGAGTTTGTTTCAGATCCAGGTACCTCCAGTGATGATTTGAAGTTTAAAGCAATCAGGAAGCATTATCAACAGAGCCAAAATCGAAGTATGGATGAAAGCCAGACGCATAATATGTCGATGGCTGGGCCATCGACTGGATCTTCCACATCTGCCCATGATCTCTACCCAGTCAATATGGATTCCCAATATTTGATTCAAAGGGAGTAG 1191 0.4282 MVSDHTFALLHSYVVSSSPSTALSSFPKLRGLDLQTGSFTLRQIKAATNNFDAVNKIGEGGFGPVYKGHLSDGTIIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVRLYGCCIEGNQLLLVYEYLENNSLARALFGPEESRLNLDWRTRHKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKEFNPKISDFGLAKLDDEDNTHISTRIAGTYGYMAPEYAMWGYLTDKADVYSFGVVALEIVSGRSNINHRPKADCVYLLDLALVLQEKGSLMELVDPRLEEYNKEEVMTMINVALQCTNASSTLRPIMSTVVSMLEGQNVVEEFVSDPGTSSDDLKFKAIRKHYQQSQNRSMDESQTHNMSMAGPSTGSSTSAHDLYPVNMDSQYLIQRE* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01242 396 MobiDBLite consensus disorder prediction 350 382 - -
Eupl06g01242 396 Gene3D Transferase(Phosphotransferase) domain 1 127 334 - -
Eupl06g01242 396 FunFam Putative LRR receptor-like serine/threonine-protein kinase 127 333 - -
Eupl06g01242 396 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 22 126 - -
Eupl06g01242 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Eupl06g01242 396 SUPERFAMILY Protein kinase-like (PK-like) 35 325 IPR011009 -
Eupl06g01242 396 ProSiteProfiles Protein kinase domain profile. 51 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl06g01242 396 SMART serkin_6 51 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl06g01242 396 Gene3D Phosphorylase Kinase; domain 1 18 126 - -
Eupl06g01242 396 CDD STKc_IRAK 57 323 - -
Eupl06g01242 396 Pfam Protein tyrosine and serine/threonine kinase 54 320 IPR001245 GO:0004672|GO:0006468
Eupl06g01242 396 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 20 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01242 Eupl-Chr6 20853429 20856513 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01242 28 381 Receptor kinase-like Gene Family AT1G07650 70.787 2.11e-177 512
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Eupl06g01242 PK_Tyr_Ser-Thr 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01242 - - nnu:104589772 580.867