Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01232 ATGGACTTGATGGCTCAGATCTATGGAGCTAATGGAAACCATTCAAATTTGACGGAGGAAGGAGTAGCAGTGAATTTAAAAGATCGGCTCGACCTCCCTCGTAAGGAGGAGAATCGAATTTCTCTCGGTTCAGCTTCGAAAACCAACGGAAGATCAGACTTCTGTATATCTGTATCTTTCGTGCAAAAGATTATCGCTGAGGCGCTGGGGACGTATTTCCTGATATTTGCGGGCTGCGGAGCGGCGGCGGTGAATCTAAGCAAAGACAATGTGATAACATTCCCTGGGAACGCCATCGTGTGGGGACTAGTGGTCATGGTTATGGTGTATACCGTCGGCCATATCTCCGGTGCCCACTTTAACCCTGCTGTTACCATTGCGTTCGCCACTTGCGGGAGATTTCCATTGAAGGAGGTGCCGGCCTATATATTGGCTCAGGTTCTTGGTGCGACACTCGCAAGTGGAACCCTACGATTACTATTCGACGGGAAGAACGAATTCTTCCTGGGAACGATGCCGACGGGGTCAGATGTGCAATCTCTGGTGCTAGAATTTATCATCACCTTCTACCTCATGTTCGTGATCTCTGGTGTTGCCACCGATGACCGAGCAGTTGGAGAACTTGCTGGGCTTGCCGTGGGAGCTACCATCCTATTAAATGTGCTTTTTACCGGGCCAATTTCGGGGGCATCGATGAATCCAGCGAGGAGTTTGGGGCCGGCAATCGCATCGAATCGTTACGAAGGAATATGGATATACATGGTGGGGCCTATCTGTGGGGCCATATCCGGTGCATGGGCCTACAATGTCATTCGTTGCAGTGACAAGCCATTGCGTGAGATCACTAGCAGGCAGCTCTTTCCTTAG 867 0.5029 MDLMAQIYGANGNHSNLTEEGVAVNLKDRLDLPRKEENRISLGSASKTNGRSDFCISVSFVQKIIAEALGTYFLIFAGCGAAAVNLSKDNVITFPGNAIVWGLVVMVMVYTVGHISGAHFNPAVTIAFATCGRFPLKEVPAYILAQVLGATLASGTLRLLFDGKNEFFLGTMPTGSDVQSLVLEFIITFYLMFVISGVATDDRAVGELAGLAVGATILLNVLFTGPISGASMNPARSLGPAIASNRYEGIWIYMVGPICGAISGAWAYNVIRCSDKPLREITSRQLFP* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01232 288 ProSitePatterns MIP family signature. 119 127 IPR022357 -
Eupl06g01232 288 Gene3D Glycerol uptake facilitator protein. 33 280 IPR023271 -
Eupl06g01232 288 SUPERFAMILY Aquaporin-like 55 280 IPR023271 -
Eupl06g01232 288 Pfam Major intrinsic protein 57 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Eupl06g01232 288 NCBIfam MIP family channel protein 66 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Eupl06g01232 288 CDD MIP 62 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Eupl06g01232 288 PRINTS Major intrinsic protein family signature 214 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Eupl06g01232 288 PRINTS Major intrinsic protein family signature 101 125 IPR000425 GO:0015267|GO:0016020|GO:0055085
Eupl06g01232 288 PRINTS Major intrinsic protein family signature 138 157 IPR000425 GO:0015267|GO:0016020|GO:0055085
Eupl06g01232 288 PRINTS Major intrinsic protein family signature 251 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Eupl06g01232 288 PRINTS Major intrinsic protein family signature 62 81 IPR000425 GO:0015267|GO:0016020|GO:0055085
Eupl06g01232 288 PRINTS Major intrinsic protein family signature 183 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Eupl06g01232 288 PANTHER AQUAPORIN NIP2-1 47 277 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01232 Eupl-Chr6 20590439 20598510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01232 31 287 Major Intrinsic Protein MIP AT5G37820 56.870 4.48e-100 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01232 K09874 - msin:131245445 391.349