Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01206 ATGCTTTTGATTCAGTGGAACTTCGATTACTTGACTGTAGCTACCGGTTTGGCATTGACTACACCTTTGATGGAAATATCGCCTATGTATGTCCTGATCATGAACAGGGCTGTTCGTGGTAGATTTCACAACGATGAGAATTGTGCTATCAGTGATCATCTTCGCAACCACGTCCATTTAACAAATTGTATTCATTTGAAGAACCATATGCACAGGCACAGCCCAATTTTGGCTGAAAATTCTTTTATGAGGGACCTTATCATCCTTCAAAGGTCAAGGTCGCTCAGAGATCCTTCGACTAGTCCTCCCTCATGGCATTCTCCTTCAATTGTTGAGTCGTTATCTAAGAAACTCGAGAAGGATGCTGCATTTATTGGAAGACGGTCTGTAGGTATTGAGCGTCGCAGGGAAGCAAGAAGGTTGGGAGGAAGCTCACCAACTTTTGCAACTGTAGCAACATCTAAAGTCGCTCCTGCTGAAGTAAGTAGGGGCAATGATGGGGGGGCAGTTATTAGTGATCGTAGTATCATGAGTAGAGTTAGGGATGCCAGAGGAATGACGGGAGAAGAATCCAGTCAAAAAAGTCGCAGAACTGACCATTCGGATGGCACGGAGGAGCCTCTACAAGATAGCCACACTTTGGTTATGGTCAAAGATTTTGTCTCAGGTAAGGCAGAGCCAAAAGATAAAAAGATTTCTCAGAAGGGGAAGCGTAGTCAAAATGTTTACCTTAAGACCCTTTCGGAACGGTTGAACGAATTTTCGGTGGACAGTGATGATGTGGAGTCATCCCATATCCATCGTCGTGGAAGACATACACGAGAGGTGAAAACCAGTGAGGAGCCAGAAGTAAGCATTCGTGGCTATCGCAATGGATTGAACAGGGTGAAGGACCGCAAATTTCGAGGCGTGAGGCGAGCTCAGGCTGTTATGGGCTCAAGAGATTTTGGAGCTCACAATGAATTGTCTGTGGCTTCTAATTCATTAGCCCAAGGGTCAACACAACGGAAGTATTATACGGAGGATGGAAAGGAAGAGGATGCCGAGCTGGAGGTTACAGGGGCTCCTAGAAACGGGTGTGGGATTCCTTGGAATTGGTCAAGAATTCACCATAGAGGTAAAACATTCCTGGACATGGCAGGAAGGAGTTTATCATGTGGGCTTTCTGACTCGAGGTTAAGGAAAGGAGGCCCCATTCCCCAAGGAAGAGATGTCTCGGATATGCCCATGGCATCTGACCATTCAAGCTCGTCTACTAAATCTGCAGCTGAGGCAGTGCCGCTGCTAGTTGAGCCATCCGGATCTCAGGAAACTTCCGATAATGCTGCTTGGGTGCGTGGGTATTCAGGGGAGCTAGGCATATTTGCTGATCATAATTTGAAGCATGATGTAGACTCCGACTTTGCTTCCGAAGCGAGATCGGGTGATCAGCACAAGTTTATAGGATACCACCATGGTAGGCACCAAAGTCTGACGCAGAAATACATGCCAAGAACCTTCAAGGATCTGGTGGGACAGAACTTGGTAATCCAAGCTCTTTCAAATGCTGTTGTGAAAAGGAAAGTCGGATTGATATATGTCTTCTATGGCGCTCATGGCACTGGAAAAACTTCATGTGCTCGCATATTTGCCAGAGCTTTAAATTGCCAATCTCCAGAACATTCCAAACCTTGTGGGCTCTGCAAATTGTGCATTGCACAAGATCTGGGTAAGAGTCGAAATGTGAGGGAAGTTGGTCCAGTCAGTAATATTGACTTTGGGAGGATTATGGATCTGCTTGACGATATGATTATATCCCAGATGCCATCTCAGTATAGAGTGTTCATTTTTGACGATTGTGACACATTGCCCCCCGATTCCTGGAGTGCTATCTCGAAGGTCATTGATCGAGCACCCAGACGTGTGGTTTTTGTCCTTGTCAGTACAAGTCTTGATCATTTGCCTCATACAATCATATCCAGGTGCCAGAAATTCTTTTTCCCAAAGTTGAAGGATGCAGATATAATCTATACTTTGCAGTGGATCGCGACCAAAGAAGATCTAGAAATTGATAAGGAAGCACTAAAACTTATTGCGTCACGGTCAGATGGATCTCTGAGGGATGCTGAGATGACTCTCGAGCAACTGAGTTTGCTTGGGCAGAAAATTTCTGTTCCTCTTGTTCAGGAGCTTGTTGGGTTGATCTCAGATGAGAAGTTAGTGGATCTACTTGATTTAGCATTATCTGCGGATACAGTGAACACTGTGAAAAATTTAAGAGAGATTATGGAAGCTGGGGTGGAGCCATTGGCATTGATGTCCCAACTCGCTACAGTAATAACTGATATTCTTGCTGGAAGCTATGTGTTCACCAAGGAAAGACTAAGGAGGAAGTTCTTCCGCCGACGAACATTATCCAAGGAAGATATGGAAAAATTGCGTCAAGCTCTGAAAACATTGTCTGAAGCTGAGAAACAACTGAGAATATCAAATGACAAATTGACATGGCTAACGGCTGCATTGCTTCAACTTGCTCCTGATCAGCAGTATAAGTTGCTTGGTTCTTCTGCAGACGCTAGTTTTGATCATAGTCCCTCAGTCCTAAATAACACCAACGGGAGTGACATAGCCAGGAAAAGTAATGTTGAGCATGCTGAGATGTCTAACAATGAGAGAGGCTTGTCGACAAATATTAGAATAGAAAACCTCCATACTGCAAGTGATGATGATGTTATTAATGATTCTGGTAAAATGAGTGGTAATAGAACAGGTGGAAAGAAACATGCTGGGACGACTCAACGAACATCTAACACAACTAGAGCTAGTGGCTGGCATATTTCAGGTAAAGGTCGCAAGGAAATTGAAGAAATTTGGTTGGCGGTGCTTGAGAAGATTCAAATTGATACCCTGAAACAGTTTATGCACCAAGAAGCAAAGCTGATTTCAGTCAGTTTTCGTACAGCTCCAACCGTACAGTTGATGTTCAGTTCATATATGACCAAATCCAAAGCAGAAAAATTTAGGGGGCACATTTTAGAGGCATTTGAATCTATTATTGGGTCTCCAGTGACAATTGAGATCAGATGTGAATCAAGGAAAGATGTGAGAGCAGGTATTCAAGTTCCGTTTACCTTACCGGCTTTTGCGGATGGTTCTTCTCAGATGATTAAAAACCAAGAGTCTGTTACATATAAGAGGATATCAAGGGCAGGATATGATACTGATGTTAATAGGGTTTCAAAAGATATAGTTTTCAAAGGTGTTGATTCTACTCAAGCCAAACCGTTGGACTCTGACTCCCTTACAATGGCAAAAAGCGAAATTGTTCAAATAGTACCTTCTCTTCGAGATCCTGAGGGTATTGAGCATATGGATAACATTGAGCAATTCAATGGAAAAGATTTGGGAAGTATTTGGAAGGGAAAAGGAGCATTTTCTCGTCAGCAATCTACCTTGGATCCTCTCCCTGAAAGAAGAAAATTTGGAGAACAACCTCAGAGTGAGAGCTTATTGAGAAGCAAGGTATCCCTTGCACATGTAATTCAGCAGGCAGAAGGATCACAACGAAGTGGGTGGTCTACACGTGAAGCAATATCGATTGCCGAAAAGCTTGAGCAAGAGAATTTGAGATTGGAACCTAGATCGAGAAGCTTGCTTTGCTGGAAAGCATCAAGAATAACTCGAGGAAAGCTTTCGCGTTTGAGAATTAGAACGCGGAGGCCACGATCTTTGTTGAAGCTCGTTCCCTGTGCAAGATGTCTTTCTACTAAATCTCCAAGGTAA 3762 0.4357 MLLIQWNFDYLTVATGLALTTPLMEISPMYVLIMNRAVRGRFHNDENCAISDHLRNHVHLTNCIHLKNHMHRHSPILAENSFMRDLIILQRSRSLRDPSTSPPSWHSPSIVESLSKKLEKDAAFIGRRSVGIERRREARRLGGSSPTFATVATSKVAPAEVSRGNDGGAVISDRSIMSRVRDARGMTGEESSQKSRRTDHSDGTEEPLQDSHTLVMVKDFVSGKAEPKDKKISQKGKRSQNVYLKTLSERLNEFSVDSDDVESSHIHRRGRHTREVKTSEEPEVSIRGYRNGLNRVKDRKFRGVRRAQAVMGSRDFGAHNELSVASNSLAQGSTQRKYYTEDGKEEDAELEVTGAPRNGCGIPWNWSRIHHRGKTFLDMAGRSLSCGLSDSRLRKGGPIPQGRDVSDMPMASDHSSSSTKSAAEAVPLLVEPSGSQETSDNAAWVRGYSGELGIFADHNLKHDVDSDFASEARSGDQHKFIGYHHGRHQSLTQKYMPRTFKDLVGQNLVIQALSNAVVKRKVGLIYVFYGAHGTGKTSCARIFARALNCQSPEHSKPCGLCKLCIAQDLGKSRNVREVGPVSNIDFGRIMDLLDDMIISQMPSQYRVFIFDDCDTLPPDSWSAISKVIDRAPRRVVFVLVSTSLDHLPHTIISRCQKFFFPKLKDADIIYTLQWIATKEDLEIDKEALKLIASRSDGSLRDAEMTLEQLSLLGQKISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLREIMEAGVEPLALMSQLATVITDILAGSYVFTKERLRRKFFRRRTLSKEDMEKLRQALKTLSEAEKQLRISNDKLTWLTAALLQLAPDQQYKLLGSSADASFDHSPSVLNNTNGSDIARKSNVEHAEMSNNERGLSTNIRIENLHTASDDDVINDSGKMSGNRTGGKKHAGTTQRTSNTTRASGWHISGKGRKEIEEIWLAVLEKIQIDTLKQFMHQEAKLISVSFRTAPTVQLMFSSYMTKSKAEKFRGHILEAFESIIGSPVTIEIRCESRKDVRAGIQVPFTLPAFADGSSQMIKNQESVTYKRISRAGYDTDVNRVSKDIVFKGVDSTQAKPLDSDSLTMAKSEIVQIVPSLRDPEGIEHMDNIEQFNGKDLGSIWKGKGAFSRQQSTLDPLPERRKFGEQPQSESLLRSKVSLAHVIQQAEGSQRSGWSTREAISIAEKLEQENLRLEPRSRSLLCWKASRITRGKLSRLRIRTRRPRSLLKLVPCARCLSTKSPR* 1254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01206 1253 CDD HLD_clamp_pol_III_gamma_tau 663 726 IPR045085 -
Eupl06g01206 1253 Gene3D - 727 839 - -
Eupl06g01206 1253 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 492 895 - -
Eupl06g01206 1253 Pfam DNA polymerase III, delta subunit 505 663 - -
Eupl06g01206 1253 NCBIfam DNA polymerase III subunit gamma/tau 489 837 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Eupl06g01206 1253 Coils Coil 796 826 - -
Eupl06g01206 1253 MobiDBLite consensus disorder prediction 389 423 - -
Eupl06g01206 1253 MobiDBLite consensus disorder prediction 159 211 - -
Eupl06g01206 1253 Pfam DNA polymerase III subunits gamma and tau domain III 719 838 IPR022754 GO:0003887
Eupl06g01206 1253 Gene3D - 482 660 IPR027417 -
Eupl06g01206 1253 FunFam DNA polymerase III subunit gamma/tau 664 726 - -
Eupl06g01206 1253 Gene3D - 664 726 - -
Eupl06g01206 1253 SMART AAA_5 522 664 IPR003593 GO:0016887
Eupl06g01206 1253 MobiDBLite consensus disorder prediction 902 939 - -
Eupl06g01206 1253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 489 713 IPR027417 -
Eupl06g01206 1253 MobiDBLite consensus disorder prediction 177 207 - -
Eupl06g01206 1253 MobiDBLite consensus disorder prediction 905 937 - -
Eupl06g01206 1253 SUPERFAMILY post-AAA+ oligomerization domain-like 727 839 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01206 Eupl-Chr6 19976431 20061925 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01206 489 775 Core DNA Replication Machinery Family AT1G21690 23.529 6.07e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01206 - - nnu:104586557 1694.48