Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01205 ATGAACAGCGCTTCCAACAACCTCACGTTGGCTCCCAGATCCTGGAGACTAAGAAGTGACTCCGACGTCAATGTTCCTAATAATAACGATTGGAACCGGAGACCGCCCCCTGTACCGCAACCCGTTCCACCCCAACCAGTGGAAATGAGTAGAGGTGCACAGTTTGAGGACAGAGTGAGAACAGGGCCTTTTGGTTTCAGGGGTTTCCCATCGCAACCTCATCCTCCGACCCGAATTCTTGTCTTGGAAAATGAGATGGTGCAAGCAGTAGTCCCTAGGCACACACAGATCATCCAAGAGTCTCCTCCGAGGATCGGCGGCCAATGGCATAGGCAACTGGTTCAAGAGGAAGAGGAATCTAAGTTGACCCTTGAGGAGCAGAAGAAGGCCTTAAAGAAGTTGACGAAGCAAATCTACTACCCTCCCCCTAAACCCAGGAGATGGCGTCTATACTATAGGGACAACAGCAGCCCAAATGAAGATGAGAAAAATGAAGATGGCAAAGGGTGCGCAATTTGCTTAGATGACTTTGTTCCCTATCAGGAGGTGCTACTCACTCCTTGCAATCACATGTTCCACGATGATTGCATCACCCCATGGGTGAAGAGCCATGGTCAGTGCCCCGTCTGTAGGTTCACACTCGGCGAGCGGAGGAGAGAGAATACCTTGCCTCTAAACAACATTACTAACAATGCCAATGTGGCTGGTAATGATCTTATGGCAGGTGATCTCGTATCGCTTATAAGGTTCATGGAAGAAGCCTTTATTCAGGTGAATATTCCTCGCTGA 789 0.493 MNSASNNLTLAPRSWRLRSDSDVNVPNNNDWNRRPPPVPQPVPPQPVEMSRGAQFEDRVRTGPFGFRGFPSQPHPPTRILVLENEMVQAVVPRHTQIIQESPPRIGGQWHRQLVQEEEESKLTLEEQKKALKKLTKQIYYPPPKPRRWRLYYRDNSSPNEDEKNEDGKGCAICLDDFVPYQEVLLTPCNHMFHDDCITPWVKSHGQCPVCRFTLGERRRENTLPLNNITNNANVAGNDLMAGDLVSLIRFMEEAFIQVNIPR* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01205 262 MobiDBLite consensus disorder prediction 1 31 - -
Eupl06g01205 262 Coils Coil 114 137 - -
Eupl06g01205 262 Pfam Ring finger domain 170 211 IPR001841 -
Eupl06g01205 262 SMART ring_2 170 210 IPR001841 -
Eupl06g01205 262 ProSiteProfiles Zinc finger RING-type profile. 170 211 IPR001841 -
Eupl06g01205 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 227 IPR013083 -
Eupl06g01205 262 MobiDBLite consensus disorder prediction 1 48 - -
Eupl06g01205 262 CDD RING-H2_PA-TM-RING 170 211 - -
Eupl06g01205 262 SUPERFAMILY RING/U-box 161 217 - -
Eupl06g01205 262 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 60 212 - -
Eupl06g01205 262 FunFam RING/U-box superfamily protein 154 228 - -
Eupl06g01205 262 MobiDBLite consensus disorder prediction 32 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01205 Eupl-Chr6 19961912 19964128 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01205 126 256 C3H Transcription Factor Family AT3G58720 42.958 1.03e-35 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01205 - - mus:103992765 213.772