Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01204 ATGGCTTCGGCTGCTATCATCTCGTCTTTGCGTAGAAGAAGATCTCCTTCGTTGGAAGCCTTTTTGGTTCCGGTCCATATAAACGATGCTGCGCTCGTTCAGACCCTAGCAATCGTTTCTGGCGAATTGATCTCGTCTTTTTCTAATCGCTCGTTCCCTTTCCAGAGGAGAAATTCCAGATCTTTAATTCGGAAGATCGAAATCTTCGTCGTTTTCTTTGAATTTCTTAGGGAGTCTGGTTCGAGGCTTCCTTCTACTGCGATTCTCTGCTTTAAGGAGATTTATCTTCTCATCTACAGATCAAAGATTCTTCTAGATTACTGCTCGCATTCTAGCAGGTTATGGCTCCTCCTCCAAAACTGTTCGCTTTCCGGCCATTTCCATGATCTGAACAAGGAGATCTCCACGCTGTTCGACGTTTTTCCGTTGACGGAGCTCAGTCTAACTCAGGATATGAGGGAGCAGATTGAGCTTCTGCAGAAGCAATCGAGAAGAGCCGAGTTGTTCATTGATCACCGTGATGAGATGCTGAGGCTCCGGCTCTTTTCCTTTCTTGATGAATTTGAGCAGGGGCAGATTCCGGATCCGGTGGAGCTGCGGACTGTTTTTCTGGACAGATTGGGAATTCGAGATGTGAAAACTTGTAGAGCTGAGATTGAATTTCTAGAAGAACAGATTTATAATCACGAGCGGGATGTTGAGCCAACCGTGTCGATACTCAATGGATTTGTTGCCCTCACTCGTTATTGCAGGTTCTTGCTTTTTGAATTTGAGGAAGAAGAAGAAGCAATGGATTCTCCTAATATCAAGAAACCGAGAAAGGGCTTAATTTCTCAAGAAATTGGGGAAACCTTTCTTACGATTCCTAAGGACTTTTGTTGCCCAATCTCCCTGGAGTTGATGCAAGACCCAGTGATAGTCTCAACGGGGCAGACCTACGACCGAACTTCAATATCCCGCTGGATGGAAGAAGGGTATTGCAGCTGCCCAAAGACGGGGCAGATGCTTGCCCACACCCGTCTTGTTCCCAATCGAGCTCTCCGAAGCCTGATTTCCCATTGGTGCACTGCTCATGGAATTCCCGTTGATCCATCAGAGAGCACAGATACATCCACCGAAAGTGTTGCTGTGGCTGCGTCCACCAATGCCGTGATTGAAGCCAACAGAGCCACTGCAGAGCTCCTCATTCAACAACTGTCAAATGGGTCACAGGGGGCAAAAACGATTGCTGCTCGCGAGCTGCGGCTCCTAGCAAAAACTGGAAAGGAGAACCGTGCTTGCATTGCAGAAGCTGGGGCAATCCCCCTTCTTAAGCAGCTACTCTGGTCGCCAAACCCAGTTGCACAAGAGAATTCTGTAACTGCCATCCTCAACTTATCAATCCATGAGAAGAACAAGAGTCGAATTATGGAGGAAGCGGGGTGTCTGGGATCAATTGTTGGGGTTCTGAGATTTGGGCACACGACTGAGGCAAGGGAAAACGCTGCGGCCACACTTTTCAGCCTCTCTGCAGTTCACGACTACAAAAAGAGAATCATGGACGAGGAAGGAGCGGTTGAGGCTCTGGCAGGGCTGTTGAGAGAGGGGAGTGCGAGGGGAAGGAAGGATGCTGTCACAGCACTATTTAATCTATCCACCCATGCAGATAGTTGCAAGAGAATGATTGAGGCAGGGGCGGTAACAGCCCTGGTGGGTGCACTGGGAACTGAAGGGGTGGCAGAGGAGGCAGCAGGAGCATTGGCCTTACTCATTAGGCAGCCCATAGGGGCTGAAGCAGTTGGGAAGGAGGAAATGGCAGTAGTGGGATTGATAGGGATGATGCGAAGGGGGACCCCGAGGGGGAAAGAGAACGCAGTTGCCGCCTTGCTTGAGTTGTGTCGGAGCGGTGGGGCAGCTGCAACTGAGAGAGTGGCCAGGGCTCCATCATTTGCGGGCTTACTTCAGACACTACTATTTACGGGTACAAAGCGGGCAAGGCGGAAGGCAGCATCACTCGCTAGAGTTTGCCTGAGGTGTGATGGTGCATCCTTGCCTAATGGGGGATGGGGCGAAGGATACCCCTTCATGAGCAACTCATCGGCAATCACATTTACAGGCAACTCAACGGCAAATCATGGTTCAAGTTTTGCCGGTGATGTGTCTGTACCAGTATCTATTTCTGTGCCGGTTTTGTAG 2175 0.497 MASAAIISSLRRRRSPSLEAFLVPVHINDAALVQTLAIVSGELISSFSNRSFPFQRRNSRSLIRKIEIFVVFFEFLRESGSRLPSTAILCFKEIYLLIYRSKILLDYCSHSSRLWLLLQNCSLSGHFHDLNKEISTLFDVFPLTELSLTQDMREQIELLQKQSRRAELFIDHRDEMLRLRLFSFLDEFEQGQIPDPVELRTVFLDRLGIRDVKTCRAEIEFLEEQIYNHERDVEPTVSILNGFVALTRYCRFLLFEFEEEEEAMDSPNIKKPRKGLISQEIGETFLTIPKDFCCPISLELMQDPVIVSTGQTYDRTSISRWMEEGYCSCPKTGQMLAHTRLVPNRALRSLISHWCTAHGIPVDPSESTDTSTESVAVAASTNAVIEANRATAELLIQQLSNGSQGAKTIAARELRLLAKTGKENRACIAEAGAIPLLKQLLWSPNPVAQENSVTAILNLSIHEKNKSRIMEEAGCLGSIVGVLRFGHTTEARENAAATLFSLSAVHDYKKRIMDEEGAVEALAGLLREGSARGRKDAVTALFNLSTHADSCKRMIEAGAVTALVGALGTEGVAEEAAGALALLIRQPIGAEAVGKEEMAVVGLIGMMRRGTPRGKENAVAALLELCRSGGAAATERVARAPSFAGLLQTLLFTGTKRARRKAASLARVCLRCDGASLPNGGWGEGYPFMSNSSAITFTGNSTANHGSSFAGDVSVPVSISVPVL* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01204 724 PANTHER U BOX DOMAIN-CONTAINING 57 669 - -
Eupl06g01204 724 SUPERFAMILY ARM repeat 392 670 IPR016024 -
Eupl06g01204 724 SUPERFAMILY RING/U-box 276 361 - -
Eupl06g01204 724 Pfam U-box domain 288 358 IPR003613 GO:0004842|GO:0016567
Eupl06g01204 724 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515
Eupl06g01204 724 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842|GO:0016567
Eupl06g01204 724 Gene3D - 390 667 IPR011989 -
Eupl06g01204 724 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 362 IPR013083 -
Eupl06g01204 724 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
Eupl06g01204 724 FunFam RING-type E3 ubiquitin transferase 287 362 - -
Eupl06g01204 724 Coils Coil 212 232 - -
Eupl06g01204 724 FunFam RING-type E3 ubiquitin transferase 364 683 - -
Eupl06g01204 724 SMART Ubox_2 291 354 IPR003613 GO:0004842|GO:0016567
Eupl06g01204 724 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515
Eupl06g01204 724 SMART arm_5 547 585 IPR000225 GO:0005515
Eupl06g01204 724 SMART arm_5 506 546 IPR000225 GO:0005515
Eupl06g01204 724 SMART arm_5 421 461 IPR000225 GO:0005515
Eupl06g01204 724 SMART arm_5 462 504 IPR000225 GO:0005515
Eupl06g01204 724 CDD RING-Ubox_PUB 289 341 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01204 Eupl-Chr6 19961515 19968209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01204 1 724 U-box Gene Family AT1G29340 66.083 0.0 897
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01204 - - nnu:104586555 1032.71