Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01183 ATGGCTTCAGAGAAGAAGCTCGCGAACCCAATGAGGGAGATTAAAGTGCAGAAGCTCGTCCTCAATATCTCCGTCGGAGAAAGCGGAGATCGCTTAACCAGAGCCTCTAAGGTGCTGGAACAGTTGAGTGGACAAACACCGGTGTTCTCCAAGGCTAGGTACACCGTTCGATCCTTTGGAATCAGACGTAACGAAAAGATTGCTTGCTACGTCACTGTCAGGGGTGACAAGGCGATGCAGCTTCTCGAGAGTGGGTTGAAAGTGAAAGAATACGAGCTCTTGAGGAGGAACTTCAGTGACACCGGCTGCTTCGGCTTCGGTATTCAGGAACACATCGATCTCGGAATCAAATACGATCCTTCAACGGGTATTTACGGTATGGACTTCTATGTTGTTTTGGAACGCCCTGGGTATCGTGTGGGTCGTCGCCGTAGGTGCAAGGCTCGTGTTGGGATCCAGCACAGGGTCACGAAGGAGGATGCGATGAAGTGGTTCCAAGTCAAATACGAGGGTGTCATCCTCAACAAGTCCCAGAATATCACAGGGTAG 549 0.5064 MASEKKLANPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVGRRRRCKARVGIQHRVTKEDAMKWFQVKYEGVILNKSQNITG* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01183 182 FunFam 60S ribosomal protein L11 2 174 - -
Eupl06g01183 182 Pfam Ribosomal protein L5 9 62 IPR031310 -
Eupl06g01183 182 PIRSF RPL5p_RPL5a_RPL11e_RPL5o 1 172 IPR002132 GO:0003735|GO:0005840|GO:0006412
Eupl06g01183 182 ProSitePatterns Ribosomal protein L5 signature. 39 55 IPR020929 GO:0003735|GO:0005840|GO:0006412
Eupl06g01183 182 Pfam ribosomal L5P family C-terminus 66 164 IPR031309 -
Eupl06g01183 182 SUPERFAMILY RL5-like 9 173 IPR022803 -
Eupl06g01183 182 Gene3D - 2 177 IPR022803 -
Eupl06g01183 182 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 2 176 IPR002132 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01183 Eupl-Chr6 19640646 19642852 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01183 1 182 Cytoplasmic Ribosomal Protein Gene Family AT2G42740 97.253 9.49e-133 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01183 K02868 - rvl:131330087 342.428