Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01178 ATGGCCTCGTTGCCGCTGGGGCCTCATCCGCCAGAGAATGAAGGAGTGAAGATTGCTCCTCGTCGGCCGGAGATGGGAGACGATAAGGAAATATCAACCACTGTTGTGGAGGGTAGCGATCCAGTGACTGGTCACATCATTTCCACAACAATTGGAGGCAAAAATGGCGAACCCAAGCGGACAATCAGTTACATGGCAGAGCGTGTTGTGGGGACTGGGTCATTTGGAATTGTCTTTCAGGCAAAATGCTTGGAAACTGGAGAGAGTGTGGCTATAAAGAAGGTCTTGCAGGACAGGCGTTATAAGAATCGTGAGCTGCAGTTGATGCGCTCGATGGATCACCCAAATGTGGTTTCTCTGAAGCATTGTTTCTTCTCAACCACGAGTAGAAACGAACTTTTTCTCAACTTAGTCATGGAGTACGTCCCTGAAACCGTGTATCGGGTTCTGAAGCACTACAGCAATGTGAACCAGAGGATGCCACTCATCTACGTGAAACTCTATACATACCAAATTTTTAGGGGGCTAGCTTATATTCACACTGTTCATGGAGTTTCCCATAGGGATGTGAAGCCCCAAAATCTTCTGGTTGATCCTCTTACTCACCAGGTCAAGCTTTGCGATTTTGGCAGTGCGAAAGTTCTGGTCAAGGGAGAAGCAAACATATCATATATTTGCTCTCGCTACTATCGGGCTCCAGAACTCATATTTGGTGCAACAGAGTATACAACATCAATTGATATATGGTCAGCTGGTTGTGTTCTTGCTGAGCTTCTTTTAGGCCAGCCATTGTTTCCTGGAGAAAGCGCAGTGGACCAGCTTGTTGAGATCATCAAGGTTCTTGGTACTCCAACTCGAGAGGAGATTCGTTGTATGAATCCAAATTACACCGAGTTTAGGTTTCCACAGATAAAAGCACATCCTTGGCACAAGGTTTTCCACAAAAGGATGCCTCCAGAAGCAATTGATCTTGCTTCACGGCTTCTTCAATATTCACCAAGTCTTCGCTGCACTGCCCTAGAAGCATGTGTCCATCCCTTCTTTGATGAGCTCCGGGAACCCAATGCCCGCCTGCCAAATGGTCGCCCTTTGCCCCCTCTCTTCAACTTTAAACAGGAATTATCTGGAGCTTCACCGGAGCTCATTAATAAGCTGACACCAGAGCACGTGAGGCGGCAATCAGGTCTGAATTTCTTGCACCCGGCAGGCACGTAA 1215 0.4733 MASLPLGPHPPENEGVKIAPRRPEMGDDKEISTTVVEGSDPVTGHIISTTIGGKNGEPKRTISYMAERVVGTGSFGIVFQAKCLETGESVAIKKVLQDRRYKNRELQLMRSMDHPNVVSLKHCFFSTTSRNELFLNLVMEYVPETVYRVLKHYSNVNQRMPLIYVKLYTYQIFRGLAYIHTVHGVSHRDVKPQNLLVDPLTHQVKLCDFGSAKVLVKGEANISYICSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGESAVDQLVEIIKVLGTPTREEIRCMNPNYTEFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACVHPFFDELREPNARLPNGRPLPPLFNFKQELSGASPELINKLTPEHVRRQSGLNFLHPAGT* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01178 404 Pfam Protein kinase domain 64 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl06g01178 404 SUPERFAMILY Protein kinase-like (PK-like) 63 373 IPR011009 -
Eupl06g01178 404 ProSitePatterns Protein kinases ATP-binding region signature. 70 94 IPR017441 GO:0005524
Eupl06g01178 404 Gene3D Transferase(Phosphotransferase) domain 1 144 391 - -
Eupl06g01178 404 SMART serkin_6 64 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl06g01178 404 ProSiteProfiles Protein kinase domain profile. 64 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl06g01178 404 CDD STKc_GSK3 59 351 IPR039192 -
Eupl06g01178 404 FunFam Shaggy-related protein kinase kappa 144 391 - -
Eupl06g01178 404 FunFam Glycogen synthase kinase-3 beta 48 143 - -
Eupl06g01178 404 MobiDBLite consensus disorder prediction 1 27 - -
Eupl06g01178 404 Gene3D Phosphorylase Kinase; domain 1 49 143 - -
Eupl06g01178 404 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 30 393 - -
Eupl06g01178 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01178 Eupl-Chr6 19575912 19586221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01178 70 351 Core Cell Cycle Gene Families AT3G48750 35.395 1.58e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Eupl06g01178 Pkinase 2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01178 K14502 - ming:122093973 794.653