Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01168 ATGTCTCTGAGAAGGGCATTTCTATGTCGAAAGGGCACCAAACGCTCCCTTACTTTCTCGAGACCCTTTGAAGAACTCAGAAGAGAGATTGAATCCCAACAAGAACCACTCAGATATGGCAGCGATGGAGAAGATGAGAAGGCGATCGAACGAGTCTCAAACGAGGATTGCTGGTCTAAAATGCTCCCAGAGCTTCTTGGAGAGATCATCCGTAGAGTTGAATCGAGCGAAGACCGGTGGCCACTTCGTAAGAACGTCGTCTCCTGCGCTTGCGTTTGCAAGAGGTGGAGAGACATCACCAAAGGGATTGTTAGATCTCCCTTAAACAGCGGGAAGATCACTTTTCCTTCTTCCCTCAAACAGCCGGGACCACATGACTTTCCCCTTCAGTGTTTTATCAAACGGAACAAGAAGAACTCGACGTTTTACCTTTATCTTGGTCTGACCCAAACATTCATGGACAAGGGGAAATTTCTCTTGGCAGCACGAAGGTTTAGGCATGGTGCTCACACTGAGTATATCATATCTCTTGATGCTGATGACCTATCCCAAGGAAGTAAAGCATACATTGGGAAGTTGAGCTCAGATTTTCTTGGCACCAAATTCACAATCTATGATAGCCAACCTCCATACTGTGGTGCAAAGCCCTCAAGCAGCCGTGCAAGCCGCCGGTTTGCAAGTAAACAAATCAGCCCGCAGGTTCCTGCAGGTAATTTTGAGATTGGCCAGGTCTCCTACAAGTTCAACTTGTTGAAGTCAAGAGGTCCAAGAAGGATGTTTTGCACGCTGCAGTGTCCCTTGACAAGAGAAACTGAGAATGATGAACCTCAGAAGAACAACTCGGAGGTGCAGAACCCAGCAGCAACTGCCGGGTACATGGTTCTGAGGAACAAGGCTCCAAGATGGCATGAGCACTTGCAGTGCTGGTGCCTGAATTTCCATGGCCGAGTGACAGTGGCTTCAGTAAAGAACTTCCAGTTGGTTGCAACAGTAGACCCCAACCAGCCAGGAGGGAAAGGGGACGAGGAAACAGTGCTTCTCCAGTTCGGAAAGGTTGCGGATGACATGTTCACAATGGATTACAGGCAGCCCTTGTCAGCCTTCCAGGCATTCGCCATCTGCCTTACCAGCTTTGGTACAAAACTTGCCTGCGAGTAA 1158 0.4862 MSLRRAFLCRKGTKRSLTFSRPFEELRREIESQQEPLRYGSDGEDEKAIERVSNEDCWSKMLPELLGEIIRRVESSEDRWPLRKNVVSCACVCKRWRDITKGIVRSPLNSGKITFPSSLKQPGPHDFPLQCFIKRNKKNSTFYLYLGLTQTFMDKGKFLLAARRFRHGAHTEYIISLDADDLSQGSKAYIGKLSSDFLGTKFTIYDSQPPYCGAKPSSSRASRRFASKQISPQVPAGNFEIGQVSYKFNLLKSRGPRRMFCTLQCPLTRETENDEPQKNNSEVQNPAATAGYMVLRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDPNQPGGKGDEETVLLQFGKVADDMFTMDYRQPLSAFQAFAICLTSFGTKLACE* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01168 385 ProSitePatterns Tub family signature 1. 313 326 IPR018066 -
Eupl06g01168 385 Pfam F-box domain 58 105 IPR001810 GO:0005515
Eupl06g01168 385 CDD F-box_AtTLP-like 58 101 - -
Eupl06g01168 385 Gene3D Tubby Protein; Chain A 114 385 IPR025659 -
Eupl06g01168 385 PANTHER TUBBY-RELATED 43 383 - -
Eupl06g01168 385 Pfam Tub family 119 380 IPR000007 -
Eupl06g01168 385 ProSitePatterns Tub family signature 2. 370 385 IPR018066 -
Eupl06g01168 385 PRINTS Tubby superfamily signature 238 265 IPR000007 -
Eupl06g01168 385 PRINTS Tubby superfamily signature 363 385 IPR000007 -
Eupl06g01168 385 PRINTS Tubby superfamily signature 342 361 IPR000007 -
Eupl06g01168 385 PRINTS Tubby superfamily signature 173 189 IPR000007 -
Eupl06g01168 385 PRINTS Tubby superfamily signature 189 213 IPR000007 -
Eupl06g01168 385 PRINTS Tubby superfamily signature 313 329 IPR000007 -
Eupl06g01168 385 PRINTS Tubby superfamily signature 295 312 IPR000007 -
Eupl06g01168 385 SUPERFAMILY Tubby C-terminal domain-like 110 385 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01168 Eupl-Chr6 19413273 19420677 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01168 52 385 TUB Transcription Factor Family AT1G53320 73.684 0.0 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Eupl06g01168 Tub 6.5e-104 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01168 K19600 - nnu:104611568 615.535