Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01135 ATGTCGCATTCAGGAAAGCCCACACCTGAAATAGGGTTTGATTCCCTGACTGATCGATTTCGCGGCGCATTGAGCTTCGAGAACAACAAGCCAGATTTCAGAGAACTAGATCTGGGTTCGCCGGTTTCCCCACTACGGACTCGTATTTCGGGCGGTGACGCTGCTGTTAGTGGGCTCACCACTACAAGTAGCAGCTCTTGCTCGTCTGGTTCGATTTCTGGGAAAACTGGGAACAACCAAGTTATTAAAAGATCCGATGGAGGTGGAAACAACCATTCCGGCGAGCTTTCTATGTCGACCGAGAGCAGTCCTACTGCTGCGGAGAGCGTCCGATCCGCCGGTGCGACTCGTAATTTCAAGCCCGGTCATAGGAGATCAAATTCAGTCGGTGCCCCATTAATCTTTTCTGGTGGTAACAGCGGTGGGAGTTCGGTCAATTCTCCGTATCTGAATGCCCTTCCGACTGGCAACATTTGCCCGTCTGGGAAGGTTTTGAAGACTGGCATGGCATGCCGGAGCTCGTCGCGAAGCGATGTGTTGGGGTCGGGGTCAGGGAATTACGGGCATGGAAGCATAATGCGGGGTGCCGTTGGGGGGAAATTGGGTGAAGCGAGTGAATCGGTGACGGTGAGGCGGGCAATGGTGAGTTCGGATCCGGAGGATTTGAAGAGGGCCGCGAACGAGCAGTATAAAAGGGGGCATTTTGCAGAAGCGCTGTGCTTGTACGATCGGGCAATCGCGATCTCGCCGGACAATGCAGCTTGTCGGAGCAACAGGGCAGCGGCATTGACGGGGCTTGGAAGGTTTGCCGAGGCGGTGAGGGAGTGCGAGGAGGCAGTGAGATTGGATCCTGGGTATGTGAGGGCACATCAGCGGTTGGCGTCTCTGCATCTGCGGTTAGGGCAGGTTGAGAATGCCCGGAGGCACCTTTGTTTTCCTGGGCAGCAGCCTGATCCAGCTGAGTTGCAAAAGTTGCAGGCAGTGGAGAGGCATCTGAGCAGATGTTCTGATGCCCGGAAGATCGGTGATTGGAAGAGTGCATTGAGGGAAGGTGATGCTGCCATTGCTGCTGGAGCAGAGTCTTCTCCTCAGCTCTTCGCATGTAGAGCAGAAGCCCTTTTGAATCTCCATCAACTTAAGGATGCAGACTCAGGCCTAGCAAGCATACCAAAATTTGAACCATCACCCACTTCATGCTCACAGACCAAGTTCTTTGGGATGCTCTCCGAATCTTACCTCTTCTTTGTCCAAGCCCAGGTTGAGATGGCATTGGGAAGGTTTGAGAATGCAGTTGCAGCTGGTGAGAAGGCTGGGCAGATTGATCCCCAAAACATCGAAGTAGCAGTGATGCTGAACAATGTTAGATTGGTAGCAAGAGCTCGTGCTCGTGGTAATGATCTCTTCAATTCTGGCAAGTTTGCGGAAGCCTGCTCAGCTTATGGGGAGGGCCTCAAGTTTGATCCTTCCAACTCTGTTCTTTATTGCAATAGAGCGGCTTGCTGGTCGAAGCTTGGACAGTGGGAGAGATCTGTTGAAGACTGTAACCAAGCTCTCAGGATCCAATCCAATTACACCAAGGCTCTTCTTCGACGGGCGGCATCCAATGGCAAGCTTGAACGATGGGTTGAATCTGTGAGAGATTATGAGGTCTTGAGGAGGGAACTTCCAGGAGACAATGAAGTAGCAGAAGCTCTATTCCATGCCCAAGTTGCATTGAAGAAATCTTGTGGGGAGGAAGTCCATAATATGAAGTTCGGTGGTGAAGTAGAGGAAGTCTCTGGCCTTGATCAGTTCAGAGCTGCAATATCTTCACTAGGTGTTTCAGTTGTCCATTTCAAGGCAGCCTCAAACCAGCAATGTGAGCAGATATCCCCGTTCCTGGACACGTTATGTGTTCGATATCCATCTGTGAATTTTCTCAAGGTGGATGTGGAGGAGAGCCCGGCAGTGGCTAAGGCTGAGAATGTGAGAATTGTTCCAACATTCAAGATTTACAAGAACAGCAACAGAGTGAAGGAGATGATTTGCCCGAGCCATCAGGTCTTGGAGTACTCGGTGAGGCATTACAGTCTCTAG 2076 0.5145 MSHSGKPTPEIGFDSLTDRFRGALSFENNKPDFRELDLGSPVSPLRTRISGGDAAVSGLTTTSSSSCSSGSISGKTGNNQVIKRSDGGGNNHSGELSMSTESSPTAAESVRSAGATRNFKPGHRRSNSVGAPLIFSGGNSGGSSVNSPYLNALPTGNICPSGKVLKTGMACRSSSRSDVLGSGSGNYGHGSIMRGAVGGKLGEASESVTVRRAMVSSDPEDLKRAANEQYKRGHFAEALCLYDRAIAISPDNAACRSNRAAALTGLGRFAEAVRECEEAVRLDPGYVRAHQRLASLHLRLGQVENARRHLCFPGQQPDPAELQKLQAVERHLSRCSDARKIGDWKSALREGDAAIAAGAESSPQLFACRAEALLNLHQLKDADSGLASIPKFEPSPTSCSQTKFFGMLSESYLFFVQAQVEMALGRFENAVAAGEKAGQIDPQNIEVAVMLNNVRLVARARARGNDLFNSGKFAEACSAYGEGLKFDPSNSVLYCNRAACWSKLGQWERSVEDCNQALRIQSNYTKALLRRAASNGKLERWVESVRDYEVLRRELPGDNEVAEALFHAQVALKKSCGEEVHNMKFGGEVEEVSGLDQFRAAISSLGVSVVHFKAASNQQCEQISPFLDTLCVRYPSVNFLKVDVEESPAVAKAENVRIVPTFKIYKNSNRVKEMICPSHQVLEYSVRHYSL* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01135 691 SUPERFAMILY TPR-like 365 548 IPR011990 GO:0005515
Eupl06g01135 691 ProSiteProfiles TPR repeat profile. 219 252 IPR019734 GO:0005515
Eupl06g01135 691 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 24 688 IPR044534 -
Eupl06g01135 691 FunFam TPR repeat-containing thioredoxin TTL4 583 690 - -
Eupl06g01135 691 Pfam Tetratricopeptide repeat 225 286 - -
Eupl06g01135 691 MobiDBLite consensus disorder prediction 54 112 - -
Eupl06g01135 691 CDD TRX_family 596 677 - -
Eupl06g01135 691 Gene3D Glutaredoxin 576 687 - -
Eupl06g01135 691 SMART tpr_5 219 252 IPR019734 GO:0005515
Eupl06g01135 691 SMART tpr_5 457 490 IPR019734 GO:0005515
Eupl06g01135 691 SMART tpr_5 411 444 IPR019734 GO:0005515
Eupl06g01135 691 SMART tpr_5 525 558 IPR019734 GO:0005515
Eupl06g01135 691 SMART tpr_5 253 286 IPR019734 GO:0005515
Eupl06g01135 691 SMART tpr_5 491 524 IPR019734 GO:0005515
Eupl06g01135 691 Gene3D Tetratricopeptide repeat domain 217 575 IPR011990 GO:0005515
Eupl06g01135 691 SUPERFAMILY Thioredoxin-like 494 688 IPR036249 -
Eupl06g01135 691 SUPERFAMILY TPR-like 218 310 IPR011990 GO:0005515
Eupl06g01135 691 MobiDBLite consensus disorder prediction 30 131 - -
Eupl06g01135 691 Pfam Thioredoxin 596 676 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01135 Eupl-Chr6 18703445 18707948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01135 456 527 U-box Gene Family AT3G07370 31.944 5.86e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01135 - - nnu:104613111 1144.03