Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01124 ATGGATACGGCCACCAAGAAGCGAAAGGCCGATGAAAACGGCTCACTCGCCGTCGAAGCCGCTTCAGGTCCCAAGCTCACTCCAGAGGACGCTCGTAAGATCATCGAGCCCTTCACTCAAGAACAGCTCCTCGACATCCTCCAGGAGGCCGCCGCCCGTCACGTCGACGTTCTCGATGCCGTCCGTTCTATCGCCGACCGTGACCCGGCCCAGCGCAAGCTGTTCATACGCGGCCTCGGGTGGGACACTACCACCGAGGGCCTACGAACTCTCTTCTCATCCTACGGTGATCTTGAAGAGCAGTTGTCATCCTTGACAAGGTCACTGGCAAGAGCAAGGGCTATGGCTTCGTCACCTTCAAGCACATCGATGGTGCTTTGCTCTCCTTGA 390 0.5821 MDTATKKRKADENGSLAVEAASGPKLTPEDARKIIEPFTQEQLLDILQEAAARHVDVLDAVRSIADRDPAQRKLFIRGLGWDTTTEGLRTLFSSYGDLEEQLSSLTRSLARARAMASSPSSTSMVLCSP* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01124 129 Gene3D - 2 107 IPR012677 -
Eupl06g01124 129 MobiDBLite consensus disorder prediction 1 29 - -
Eupl06g01124 129 Coils Coil 95 115 - -
Eupl06g01124 129 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 74 100 IPR000504 GO:0003723
Eupl06g01124 129 SUPERFAMILY RNA-binding domain, RBD 64 100 IPR035979 GO:0003676
Eupl06g01124 129 PANTHER GEO13361P1-RELATED 56 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01124 Eupl-Chr6 18480769 18481158 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01124 29 114 C2H2 Transcription Factor Family AT2G19380 36.047 3.24e-17 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01124 K12741 - nnu:104612135 165.622