Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01123 ATGACTGTCACACAACTCGCCGCTACGGGGGCATCTGGACCCACCGCCAACGCTGCCCCGGCCGTTGATGTCTCAATGAGGAAGATTTATGTTGGGAACGTACCGATTGAAATGCCGGCAGACCGGCTCTTGGCACATTTCTCATCTTATGGAGAAATAGAGGAAGGGCCGCTAGGGTTTGATAAGCAGACGGGGAAGTCGAGAGGGTTCGCGTTGTTTGTCTATAAGAATGCCGAAGCCGCAAAGGCTTCTCTTGTTGATCCCATCAAGACAATCGATGGGCATCAGCTGGTTTGCAAATTGGCGATTGAGGGAAAGAAGGGGAAGCCTGGTGTGTCTGCCCCACCAGGAGGAATTCAAGCCCCAACTGGTGTCCCAGGCGACATTGCTGGAGACGGGCTTGGCATGCCACCTCCATCTTCCATGCCCAATTCTCTCACCTCTCAGTACGGTGCACCGGGTGGTCTTTCTTCTTATGGTGGATTCTCCGCCGCGCACCAGGGCCCACCGGGGTTGGCCCATCATCATCACCACCATCTGAACTCGCCCTTGCAATCATCGATTGGTAATCCAGGGCTGTCCTCGGTGGGGAGTCAGGTGCCGTCCTCATTGGGTGGCAGCGGTGGATATGGTGCCGGGTTGGGTGGTCCTTATGGTGGATTGGGTGCTGGTGGCCCCACTTCAGGCGGGTATGGTGGGCCTACTTCGGCTGGGTATGGTGGATTGGGTGGTAGTGGTGGTGGTGGTGGTGGATCGTCTTTGTATAGGTTGCCGCCAGGTTCAGTCGGGATGCCTTCTGGGGGTTATCCAGAGGGTGGGCATTATGGATTGTCATCGTCTGCATTCCCAAGCCAGCACCACCAGCCTTCGGGGTCATCCCCTGTACCTAGGGTTCCACCCGGGGGGATGTACCAGAGCATGCCCCCTTATTACTGA 936 0.5684 MTVTQLAATGASGPTANAAPAVDVSMRKIYVGNVPIEMPADRLLAHFSSYGEIEEGPLGFDKQTGKSRGFALFVYKNAEAAKASLVDPIKTIDGHQLVCKLAIEGKKGKPGVSAPPGGIQAPTGVPGDIAGDGLGMPPPSSMPNSLTSQYGAPGGLSSYGGFSAAHQGPPGLAHHHHHHLNSPLQSSIGNPGLSSVGSQVPSSLGGSGGYGAGLGGPYGGLGAGGPTSGGYGGPTSAGYGGLGGSGGGGGGSSLYRLPPGSVGMPSGGYPEGGHYGLSSSAFPSQHHQPSGSSPVPRVPPGGMYQSMPPYY* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01123 311 SMART rrm1_1 28 100 IPR000504 GO:0003723
Eupl06g01123 311 MobiDBLite consensus disorder prediction 140 154 - -
Eupl06g01123 311 MobiDBLite consensus disorder prediction 293 311 - -
Eupl06g01123 311 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 86 IPR000504 GO:0003723
Eupl06g01123 311 Gene3D - 21 109 IPR012677 -
Eupl06g01123 311 MobiDBLite consensus disorder prediction 182 203 - -
Eupl06g01123 311 MobiDBLite consensus disorder prediction 109 203 - -
Eupl06g01123 311 MobiDBLite consensus disorder prediction 278 292 - -
Eupl06g01123 311 SUPERFAMILY RNA-binding domain, RBD 18 118 IPR035979 GO:0003676
Eupl06g01123 311 MobiDBLite consensus disorder prediction 250 311 - -
Eupl06g01123 311 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 107 IPR000504 GO:0003723
Eupl06g01123 311 PANTHER GEO13361P1-RELATED 21 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01123 Eupl-Chr6 18479804 18480739 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01123 23 119 C2H2 Transcription Factor Family AT2G19380 35.354 2.61e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01123 K12741 - nnu:104612135 409.453