Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01094 ATGTCTGCGGAAAAAGATTATCATGATCACGATAACGATCACTACCCCTTCTTCCATGACGGTCATAAGAGATACAGTTTAAACAGCAAGATCATGATCTCGGCCATCATCTGCTTATTCTTTGTTGTTATAATCGTCGTAATTCTCCACATCTATGCCAGGTGTGTCCTCAGACGCCAAGCAAGACGTCGCGTTGCAATCCGTCAACTGGGTATGGGGGTTGCAGCTGCACAAATGAACTCCCGCGAGCCACCTAAGACAGGCCTTGATCCATCAGTGATTGCCTCCCTACCTATTTTTGTCTATAAACCACCCGAACAGGTCGACGACACCGCTACCGTTGGCGGTGTCGAGTGCGCGGTGTGCTTAAGCAATTTAGAGGAAGAAGAGATGGCTAGGCTTCTACCCAACTGTAACCATACCTTCCATGCACAGTGCATCGATATGTGGTTGAACTCACGCTCTACATGTCCAATTTGCCGAACCGAAGCGGAACCTCGAGACCAGCTAGGGTCGTCGTCGTCCATTGAATTGGGTACCGTTGTGGGTCCTGCCACAGCTCCACCACTGGATTCGATGAACTCTACTACACTACCATGTTCAGAGGGTACATCAGATGGTGCGGGGCAATCTTCGAAGGTGGGGGGATCAGTTTCGCGACTGAGCTCGTTTCGGAGGATTCTGAGTAGGGAGAGATCGGGGAGGAGAATACAACCTTGTGAACAAACAGAAGGCGATGGAGATCTAGAGAGGCAGTGA 759 0.5007 MSAEKDYHDHDNDHYPFFHDGHKRYSLNSKIMISAIICLFFVVIIVVILHIYARCVLRRQARRRVAIRQLGMGVAAAQMNSREPPKTGLDPSVIASLPIFVYKPPEQVDDTATVGGVECAVCLSNLEEEEMARLLPNCNHTFHAQCIDMWLNSRSTCPICRTEAEPRDQLGSSSSIELGTVVGPATAPPLDSMNSTTLPCSEGTSDGAGQSSKVGGSVSRLSSFRRILSRERSGRRIQPCEQTEGDGDLERQ* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01094 252 SUPERFAMILY RING/U-box 94 166 - -
Eupl06g01094 252 CDD RING-H2_EL5-like 118 161 - -
Eupl06g01094 252 SMART ring_2 119 160 IPR001841 -
Eupl06g01094 252 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Eupl06g01094 252 MobiDBLite consensus disorder prediction 225 252 - -
Eupl06g01094 252 FunFam E3 ubiquitin-protein ligase ATL6 76 167 - -
Eupl06g01094 252 MobiDBLite consensus disorder prediction 165 252 - -
Eupl06g01094 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 166 IPR013083 -
Eupl06g01094 252 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 27 171 - -
Eupl06g01094 252 Pfam Ring finger domain 118 161 IPR001841 -
Eupl06g01094 252 MobiDBLite consensus disorder prediction 189 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01094 Eupl-Chr6 17932372 17933527 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01094 2 252 C3H Transcription Factor Family AT2G42360 43.874 3.02e-54 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01094 K19038 - msin:131238745 241.121