Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01093 ATGCTTCTCCACATCTATGCGAGACGCCAAGCAAGACATCATGCCGCAATCCGTCAACTGAGCTTGGATGTTGCAGCTGCACAAGTCCACTCCTGTGAGCCACCGAAGACGGGCCTCGATCCATCGGTCATTGCCTCCCTACCTATGTTTGTCTATAAACCAATCGAACTGGTCGACGGCACCACCACCGTCGAGTGCTCAGTATGCTTGAACTCCTTCGAGGAAGAAGAGATAGCCAAGCTTATACCCAACTGTAAGCACATCTTCCATGCGCAGTGCATTGATACGTGGTTAAGGGTGCACACGACTTGCCCAATTTGCCGAACTGGAGCCGAACCTCGAATCCAGCCTGGGTCTATTGAAATGGGTTCTATGCTCCCTGCCACAGCTCCACCATAG 399 0.5238 MLLHIYARRQARHHAAIRQLSLDVAAAQVHSCEPPKTGLDPSVIASLPMFVYKPIELVDGTTTVECSVCLNSFEEEEIAKLIPNCKHIFHAQCIDTWLRVHTTCPICRTGAEPRIQPGSIEMGSMLPATAPP* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01093 132 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 113 IPR013083 -
Eupl06g01093 132 ProSiteProfiles Zinc finger RING-type profile. 66 108 IPR001841 -
Eupl06g01093 132 FunFam E3 ubiquitin-protein ligase ATL6 27 114 - -
Eupl06g01093 132 Pfam Ring finger domain 65 108 IPR001841 -
Eupl06g01093 132 CDD RING-H2_EL5-like 65 108 - -
Eupl06g01093 132 SUPERFAMILY RING/U-box 43 113 - -
Eupl06g01093 132 SMART ring_2 66 107 IPR001841 -
Eupl06g01093 132 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 2 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01093 Eupl-Chr6 17922408 17923752 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01093 4 117 C3H Transcription Factor Family AT2G42350 46.154 1.53e-30 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01093 K19038 - msin:131238745 154.451