Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01092 ATGCTCACGCTTATCTGCTTAGCGCTTGTTGTTGTTTTCCTCTTCCTTCTCCATATCTATGCCAATTGTGTCCTCAGACGTAGAGCTGAAACCCATCAACTGAGCATGGGTGTTGCACCTGCACAAGTGCACTCCAGTGAGCCACCCCCCAAAACCGGGCTCGATCCATTGGTCATCGCCATCCTACCAAAATTTGTCTATAAACCAACCGTCAAGGCCGATGACACCGCCATCATCGACTGCTCGGTGTGCTTGAGCATCTTAGAGGAAGAAGAGATTGTTAAATTTATACCCAACTGTAAGCACACCTTCCATGCACAGTGCATCGATGTATGGTTAAGCACGAACTCGACTTGCCCAAATTGTCGAACTGGTGTGGAGCCTCGAAGCCAGCCCAGGTTCGTTGAATTGGGTTCTGTTGGTACGTCGGATGCTGCCGCTCAATCTTCGAAGGTGGGGTGA 462 0.5 MLTLICLALVVVFLFLLHIYANCVLRRRAETHQLSMGVAPAQVHSSEPPPKTGLDPLVIAILPKFVYKPTVKADDTAIIDCSVCLSILEEEEIVKFIPNCKHTFHAQCIDVWLSTNSTCPNCRTGVEPRSQPRFVELGSVGTSDAAAQSSKVG* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01092 153 CDD RING-H2_EL5-like 80 123 - -
Eupl06g01092 153 SUPERFAMILY RING/U-box 64 129 - -
Eupl06g01092 153 ProSiteProfiles Zinc finger RING-type profile. 81 123 IPR001841 -
Eupl06g01092 153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 129 IPR013083 -
Eupl06g01092 153 SMART ring_2 81 122 IPR001841 -
Eupl06g01092 153 Pfam Ring finger domain 80 123 IPR001841 -
Eupl06g01092 153 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 5 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01092 Eupl-Chr6 17918017 17919242 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01092 7 143 C3H Transcription Factor Family AT2G42360 46.853 5.23e-31 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01092 K19038 - msin:131238745 155.221