Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01083 ATGCCTCTCCTTACTGCTTCATCTCTACGGATCAGTTTCTTCTTCATCTTGTTCGTCATTCTTCTCTCCCATGGAGTAAACACAGCGGCCCAAGATGACGACTATAAAAAAGTTGTGAACATTGGGGCCATCATCGGTGTTGATTCCCGCGCAGGAAAAGAGGAGAAGACAGCCATGGAAATCGCGATCCGAGACTTCAACGATGCCTCGAACAACAAGTACAAGTTAGTCCTCCATGTTCGCAACTCCAGTGGGGATCCTCTCCGAGTAGCCTCCTTGGCACGTCATCTAATAAAAAATCAGCGAGCGCAAGCGATTCTTGGCATGGAGACATGGCAGGAGGCGGCATTAGTTGCCGAAGTCGGAAATCGAGCACAAGTGCCTGTTCTTTCTTTTGCGACAGCTGCCATCACCCCACCGTTAACGTCGGTGCGATGGCCTTTCTTGGCTCGAATGGCTAGCGATGAGTCCCGACAGATGAGATGTGTGGCCGCCATGGTGCGCTCGTACCAGTGGCGTAGAGTCATAGTAATCTATGAAGATGACACTTATGGTGGTGATTCAGGGATCATTAGACTTCTCTCCGATTCTCTTCAAGAGGTAGGCTCGGAGATTGCGTACCATTTGACTCTCCCACCCTTAACTTCTCTCTCTGACCCAAAAGCCACCATTCGAGAAGAACTAGAAAAACTAAAGAGCCAGCAGTCCAGGGTCTTCATCATCGTTCAATTGTCCTTACCGTTAGCCACCCATATGTTCGCAGAAGCAAAGAAAATGGACATGATGGGAAAAGACTCCGTCTGGATAACTACGGACTCAATTACAAGCCTCGTCCATACCGTTAACTCCTCCGTTATCTCCTCCATGGAAGGCCTTGTAGGAATGAAGTCCTACTCCTCGGAAAGCACTGCATCGTTCAGAGATTTCAAAATCAAATTCCAGAAAAATTTTCAATCAAAATATCCAGAAGAAGATAACTTCGAGCCGGGTATTTACGCTCTCCGCGCATACGATACTATTTCAACTATTGCACGAGCTATGGAGAGATTAACCAACAACAGCACCTCAAAAATGTTGTTAGAAAAAATCTTATTGAGCAATTTCAGTGGTTTAAGTGGCAAAATTCGATTTGAAGGTGGGGAATTATTGCACTCGCCGACTTATCGGATTGTTAACGTGTTTGGAAAGACACACAAAGAGATCGGATTATGGTCACCGGATTCTGGATTCTCGGACAACGGTACAAGAGGTGATGCTCGGATCATGGAAGTATATTGGCCGGGACGCCTCCTACAGCGGGCCCCACGAGGATGGGCCATGCCTACGACTGAGAAGCGGTTGAAGATCGGTGTACCGAGCATGGCCCATTTCAAGGAATTCGTGAGTGTGGAAAAGGACAAGCCGACAGGTTTCTGCATTGATGTGTTCGAAATGGCCCTGAATATTCTAAGGAATGAATATGAGGTTGAATATGATCTTGAATATGATTTTAAGGCCTTCAATGGGACGTACGATGACCTAGTGGCTCAGGTCTATGAAAAGGAATTCGATGCCGTGGTGGGCGACGTGACGATCCTAGCCAACCGATCAGAAGATGTGGAATTCACTCAGCCTTACATGGAGTCAGGGTTGACGATGATAGTTCCCGCGAAAGTGGAAGAATCTCAAAAGGCCTGGATGTTCGTGAAGCCCTTCACCAGGGGGATGTGGGTAGCGAGTGGCAGCATCTTTGTCTACACAATGTTCATTGTCTGGTTCTTGGAACACAGATCCAATTCAAACTTCCGAGGCCCATGGAAGAGTCAACTCGGCACCGCGTTGTGGTTCACTTTCTCTACACTCTTTTTTGCACATAGGGAGAGAATTCATAGCAACTTCACTCGAGTGGTGATCGTGGTGTGGCTCTTTGTGGTCTTGGTCCTGAACTCTAGCTACACTGCCAGTCTCACCTCCATGCTCACGGTCCAACGACTTGAGCCAACCGTAACAGATATTGAGTCATTAAAGAGGAAAAATTCAACAGTTGCCTGTGATGGTTACTCATTTGTCCGTAAATACTTAGAAGAGGTCATTGGTTTCCACCCAGAAAATATCAAGAGTTTCAGTGAGGAAAAGGACTATGGAGAAGAATTAAAAAAGGGAAATATCATGGCCGCCTTCATGGAGCTCCCTTACGCAAGAGTCTTCCTCTCCAGAAACTGCAAGGGATACAAGGCCACCGGACAGACCTACAGATTTGGAGGCTTTGGTTTTGTCTTTCCAAAAGGTTCTCCTATAGCTTCTGACATCTCTAAAGCCATTCTAAAACTATCCGAAAATGGGAGGATGACCCAATTGGAGAACAAGTGGTTCAAATCCGAGTGTTCAAATTCCACAACTACAACTAGCAACGGAAACTTGAACCTCCAAAGCTTTTGGGGGCTTTTCGTCCTCACCGGAGGTACTTCTACCATTGTTTTCCTACTATACCTCGTTAGCCTACTCAAGAAGTTTCAACACCATCAAGAAGCTTACGGAGGCAATACATCACCCATCGACGAGAGCTTGTGGAATCGGACGAGGAGGCTCGTGATCTACTTCAATAAACGCCAGCCTCACCTTCCAGATAGAGCTTCGATTTCAGCACAAGCGAGAGATGTCGAGGAATGGATTTCTGCAAGCGTGGGGTATGTGAGTGAGTACAACACTCCAAGGCAACCTCAGACATCTGCACCAGCTGAAATTCAAATGACGGAAACAAATATGGATTGTTCGGGTACTCAAACACGTCCGTCGTTTCCTAGTTTTGCGTCTTTCCCTGGGTGGGATAGGCGCGTCCATGCTTTTACTTTGGAGTACCCTGAACGGGAACATCCCCGGCCCGTCTAG 2868 0.4707 MPLLTASSLRISFFFILFVILLSHGVNTAAQDDDYKKVVNIGAIIGVDSRAGKEEKTAMEIAIRDFNDASNNKYKLVLHVRNSSGDPLRVASLARHLIKNQRAQAILGMETWQEAALVAEVGNRAQVPVLSFATAAITPPLTSVRWPFLARMASDESRQMRCVAAMVRSYQWRRVIVIYEDDTYGGDSGIIRLLSDSLQEVGSEIAYHLTLPPLTSLSDPKATIREELEKLKSQQSRVFIIVQLSLPLATHMFAEAKKMDMMGKDSVWITTDSITSLVHTVNSSVISSMEGLVGMKSYSSESTASFRDFKIKFQKNFQSKYPEEDNFEPGIYALRAYDTISTIARAMERLTNNSTSKMLLEKILLSNFSGLSGKIRFEGGELLHSPTYRIVNVFGKTHKEIGLWSPDSGFSDNGTRGDARIMEVYWPGRLLQRAPRGWAMPTTEKRLKIGVPSMAHFKEFVSVEKDKPTGFCIDVFEMALNILRNEYEVEYDLEYDFKAFNGTYDDLVAQVYEKEFDAVVGDVTILANRSEDVEFTQPYMESGLTMIVPAKVEESQKAWMFVKPFTRGMWVASGSIFVYTMFIVWFLEHRSNSNFRGPWKSQLGTALWFTFSTLFFAHRERIHSNFTRVVIVVWLFVVLVLNSSYTASLTSMLTVQRLEPTVTDIESLKRKNSTVACDGYSFVRKYLEEVIGFHPENIKSFSEEKDYGEELKKGNIMAAFMELPYARVFLSRNCKGYKATGQTYRFGGFGFVFPKGSPIASDISKAILKLSENGRMTQLENKWFKSECSNSTTTTSNGNLNLQSFWGLFVLTGGTSTIVFLLYLVSLLKKFQHHQEAYGGNTSPIDESLWNRTRRLVIYFNKRQPHLPDRASISAQARDVEEWISASVGYVSEYNTPRQPQTSAPAEIQMTETNMDCSGTQTRPSFPSFASFPGWDRRVHAFTLEYPEREHPRPV* 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01083 955 Gene3D - 46 384 - -
Eupl06g01083 955 Gene3D - 559 690 - -
Eupl06g01083 955 CDD PBP1_GABAb_receptor_plant 40 413 IPR044440 -
Eupl06g01083 955 FunFam Glutamate receptor 558 696 - -
Eupl06g01083 955 Gene3D - 155 406 - -
Eupl06g01083 955 Pfam Ligand-gated ion channel 786 814 IPR001320 GO:0015276|GO:0016020
Eupl06g01083 955 SMART GluR_14 448 786 IPR001320 GO:0015276|GO:0016020
Eupl06g01083 955 FunFam Glutamate receptor 159 327 - -
Eupl06g01083 955 PIRSF IGluLR_plant 8 921 IPR017103 -
Eupl06g01083 955 Gene3D - 709 793 - -
Eupl06g01083 955 Pfam Receptor family ligand binding region 55 393 IPR001828 -
Eupl06g01083 955 Gene3D - 441 558 - -
Eupl06g01083 955 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 851 IPR015683 -
Eupl06g01083 955 SUPERFAMILY Periplasmic binding protein-like II 433 786 - -
Eupl06g01083 955 CDD GluR_Plant 445 784 - -
Eupl06g01083 955 FunFam Glutamate receptor 442 557 - -
Eupl06g01083 955 SUPERFAMILY Periplasmic binding protein-like I 37 428 IPR028082 -
Eupl06g01083 955 Pfam Bacterial extracellular solute-binding proteins, family 3 460 785 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01083 Eupl-Chr6 17722534 17729680 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01083 13 833 Ion Channels AT2G29120 35.889 7.39e-175 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01083 - - nnu:104613179 1045.8