Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01066 ATGTGGCAAAGGAGCATGCTATGCACAAGTCAGATGCTTGATTTGGAAATGGATCAACAAACCCAGGGATATCTTCATCCTGAATTATGCACCCTTTTGGGCAACGATGTTAATTTTCCACACCCAAATGTCAATCCAGTGTTATCAGCTTCTGGAAATCTCGATCTGCGTCATTTGCCAGATCATCATGATAGGAGCATATTCTCTGGTAACCAGTATAATGGTCTTCCGCATCATCATCCCATCACAAATCTCGATTTGGGGAGTGCTGCTCCATCCAACTTCTATAATCCTTACATGATCCCTTCTTCTGGAAGTAGAGTTTTCCCTGTACCGCTAAATCATGGTTCCTCTGGTCAGCCATCTTCCAGCAATCTTGAAATCATTGGAGTTGGTGTAGATGAGTATGAAAGGAACAATCACTTAATGGATGGTGATAGAAGTTTGGGCAAGAGAAAGAATGCTGAAGGAGTTCCAGGGATCTACCACCATGCTAATGGCTCTGCAAGCTCGAGTTCATCTTCATTGGGTGCTCCCTTGAACACTTGGCCACACCAGTGGGAGGAACAGTTTGAATCTGGTGCCGATGTGTTGGATGCCTCAGCTTTTGTACTGCCTGAGCACAGAGCGAATGGCAATCTATCAATCATGGAAGGTGGATCTCGGAGAAGTGTGACGAGCAGATCAGGGACTATTGGCCTTCAGTTGGACTCCGTTCTAGTGCATAACCAGAATCATCTAGATCAGGGGAATTTTATGGGTCAGTCCTTTCAACCAGCCAGCAGTGCCTGGGTGGACCAACAGTTTGGGAGTAACAGAAGCACTTCGACCTGGAGCTATGCTCCTGCTATACCTTATTTACATGGGAGAAGTGTCAACGGAGGTTCTTTAGAGATTGGAAGCATGAGTGAATTGGGATATCAGGATACCACAAACAACAGAAATCCTGCAATTTTCTTGCATCCTTCCTCCATGCACCACCACCACCAGCTTCACCATCATCATCCCCTGCCTCCACCCATGCAAGGGATGCAGGGCCACAATTATAACTACCATCCTCATGTACCTATACCTTCCTACAGGCATCCAATGAATAACACAACACACTACGGCACTCTGAATCCTTCCCGGGACAGTTTGGAGACAGGGACTAGGAATGCTAGACCTTCCAATGGCCTCAGGATGTACCGGCCTCACCAGAGTGGGGTGCGTCAGAGAGCTCCAGAAGACAGAAACAGGCCTCGCTTGAGAATTCTGTCAGCAGATGAGGTTGCCATACTGGAGTTTCCGGGCTTTTATGAAGTTGGGAGTTTCATTGACCGACACAGAGAGATGCGGTTGGATATAGATGACATGTCTTATGAGGAACTGCTCGCATTGGAGGAACGGATTGGCAACGTAAAAACCGGGTTGTCAGAAGAAACCATCTTAAGTCGTCTCAAGACGAGAATTCATGTTTCATCTGCCAAATGTATCCATTTGGATGAATCAGCAGACATGGATCAGGAGACTGAAACCTGCGTTATATGCCAGATTGAGTACAAGAACCAGGAGAAGATTGGAACTCTCTCATGTGGACATGAATACCATGCAGACTGCATAAAACAGTGGTTGCTGGTGAAGAATGTGTGTCCCATATGCAAAACATCAGCTTTGACGGTCGAGGGCAGAGATGGATAG 1680 0.4655 MWQRSMLCTSQMLDLEMDQQTQGYLHPELCTLLGNDVNFPHPNVNPVLSASGNLDLRHLPDHHDRSIFSGNQYNGLPHHHPITNLDLGSAAPSNFYNPYMIPSSGSRVFPVPLNHGSSGQPSSSNLEIIGVGVDEYERNNHLMDGDRSLGKRKNAEGVPGIYHHANGSASSSSSSLGAPLNTWPHQWEEQFESGADVLDASAFVLPEHRANGNLSIMEGGSRRSVTSRSGTIGLQLDSVLVHNQNHLDQGNFMGQSFQPASSAWVDQQFGSNRSTSTWSYAPAIPYLHGRSVNGGSLEIGSMSELGYQDTTNNRNPAIFLHPSSMHHHHQLHHHHPLPPPMQGMQGHNYNYHPHVPIPSYRHPMNNTTHYGTLNPSRDSLETGTRNARPSNGLRMYRPHQSGVRQRAPEDRNRPRLRILSADEVAILEFPGFYEVGSFIDRHREMRLDIDDMSYEELLALEERIGNVKTGLSEETILSRLKTRIHVSSAKCIHLDESADMDQETETCVICQIEYKNQEKIGTLSCGHEYHADCIKQWLLVKNVCPICKTSALTVEGRDG* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01066 559 MobiDBLite consensus disorder prediction 372 389 - -
Eupl06g01066 559 Pfam Ring finger domain 506 548 IPR001841 -
Eupl06g01066 559 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 472 552 IPR013083 -
Eupl06g01066 559 MobiDBLite consensus disorder prediction 372 410 - -
Eupl06g01066 559 ProSiteProfiles Zinc finger RING-type profile. 507 548 IPR001841 -
Eupl06g01066 559 SUPERFAMILY RING/U-box 506 553 - -
Eupl06g01066 559 SMART ring_2 507 547 IPR001841 -
Eupl06g01066 559 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 147 552 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01066 Eupl-Chr6 17471042 17476148 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01066 440 552 C3H Transcription Factor Family AT2G15530 61.062 2.89e-40 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01066 K19041 - nnu:104613187 655.595