Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01063 ATGACTACGGCGAGATTCATAAAGTGCGTAACTGTTGGCGATGGAGCCGTGGGGAAGACTTGCATGCTCATCTCCTACACAAGCAACTCGTTCCCTACGGACTATGTTCCAACAGTTTTCGACAACTTCAGTGCTAATGTGGTGGTAGATGGGAGCACGGTAAATCTTGGATTATGGGATACTGCAGGGCAGGAAGATTACAACAGGCTAAGGCCTTTAAGTTATAGAGGTGCTGATGTGTTTTTATTGGCCTTCTCTCTCATCAGCAAGGCCAGCTTTGAAAATATATCCAAGAAGTGGATTCCTGAGTTGAGACACTATGCTCCAACCGTGCCAATTGTGCTGGTGGGGACCAAGCTTGATTTACGGGAAGATAAGCATTTTTTGATCAACCACCCTGGTGCAACACCAATCACAACCGCTCAGGGCGAGGAATTGAAAAAGGCTGTAGGTGCAGCCATGTACATTGAGTGCAGCTCCAAGACTCAACAGGTTACTTCCATACCATGGAACGGAAATGAGCTAAACATGGTCGATACGCCTGGACATGCGGATTTTGGTGGTGAAGTTGAGAGGGTTGTTGGCATGGTGGAGGGAGCAATTTTAGTTGTAGATGCCGGTGAAGGTCCCCTTGCACAGACAAAGTTTGTCCTTGCAAAAGCTTTAAAGTATGGCCTGCGCCCAATTCTCCTCCTGAACAAAGTAGACCGACCTTCGGTTTCTGAAGAGAGATGCGATGAAGTGGAAACTCTGGTATTCGATCTTTTTGCAAATCTTGGAGCTTCAGAGGAACAACTAGATTTTCCAGTTCTTTATGCTTCTGCCAAGGAAGGATGGGCTTCCTCCACCTTCACCAAAGACCCTCCTGATAATGCAAAAAACATGTCAGAATTGCTTGATGCCATTATCAAACATGTTCCTCCACCAACAGGAAGCCTCGAGGCACCTTTCCAGATGCTGGTTTCCATGATGGAGCGTGACTTCTATCTTGGGAGAATATTGACCGGACGCATCTCTTCAGGAATCATTCGTGTTGGAGATAGAGTACATGGTCTTCGTAGCAAGGATTCTGGGGTTGAGAAATTTGAGGAAGGAAAGGTTCTGAAACTTATGAAAAAGAAGGGTACAGCCGTGGTTCTGATTGATAGTGCAGGGGCTGGTGATATAATATCAATGGCTGGGTTGACAAGTCCATCAATTGGTCACACGGTGGCGAATGTTGAGGTCACGACTGCACTGCCCACGGTTGAGTTAGATCCTCCAACCATTTCCATGACTTTTGGTGTTAATGACTCTCCATTGGCTGGCCGTGACGGAACCCATTTGACGGGAGGAAAGATTGGTGACCGGCTAATGGCAGAAGCAGAAACAAATCTTGCTATAAATGTGCTTCCAGCCTTGTCTGACTCATATGAAGTGCAAGGGAGGGGCGAGCTCCAACTAGGTATCTTAATTGAGAACATGAGGCGTGAAGGGTTTGAGCTTTCTGTTTCACCACCTAAAGTCATGTATAAAAGTGAGAATGGTGCAAAGCTTGAGCCGTTGGAAGAAGTGACAGTTGAGGTGAACGAAGAGCATGTTGGGCTTGTTATGGAAGCCCTATCACATAGGCGAGCTGAGGTTATTGACATGGGTCCTGTCCCAGGGAATATTGGCAGGACTAGAATGTCTTTGACTTGTCCGTCAAGGGGACTGGTTGGCTATAGGAGTGTATTTAGCAGTGATACTCGTGGCACTGGATTTATGCACAGAGCTTTCCTGACCTATGCAAAATACCGGGGCCCTCTGGGAAATGTCAGGAAAGGAGTGTTGGTATCAATGGGGAATGGAACCGTCACCGCGCATGCACTTATGAGTTTAGAAGCTCGTGGAACTCTCTTTGTCAACCCTGGCATGGAGACTTATGATGGCATGATTGTTGGAGAACACTCACGAGATACGGATCTCGATATCAACCCTGTACGAAGTAAGGAACTGACCAATGTGCGTGCTGCGGGCAAGGATGAGAATGTGAAGTTGTCCCCACCTCGTCTTATGACTCTTGAAGAAGCGATAGGGTATGTTGCTTCTGATGAGCTCATCGAGGTGACTCCAAAAGCCATTCGGTTGAGGAAGAGATACTTGGATGCTAACAAGCGGAAAATTATGAGGAATAAGCCCAAAGACTGA 2169 0.4693 MTTARFIKCVTVGDGAVGKTCMLISYTSNSFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASFENISKKWIPELRHYAPTVPIVLVGTKLDLREDKHFLINHPGATPITTAQGEELKKAVGAAMYIECSSKTQQVTSIPWNGNELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPSVSEERCDEVETLVFDLFANLGASEEQLDFPVLYASAKEGWASSTFTKDPPDNAKNMSELLDAIIKHVPPPTGSLEAPFQMLVSMMERDFYLGRILTGRISSGIIRVGDRVHGLRSKDSGVEKFEEGKVLKLMKKKGTAVVLIDSAGAGDIISMAGLTSPSIGHTVANVEVTTALPTVELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGDRLMAEAETNLAINVLPALSDSYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKSENGAKLEPLEEVTVEVNEEHVGLVMEALSHRRAEVIDMGPVPGNIGRTRMSLTCPSRGLVGYRSVFSSDTRGTGFMHRAFLTYAKYRGPLGNVRKGVLVSMGNGTVTAHALMSLEARGTLFVNPGMETYDGMIVGEHSRDTDLDINPVRSKELTNVRAAGKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKRYLDANKRKIMRNKPKD* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01063 722 CDD BipA_TypA_C 528 593 IPR035651 -
Eupl06g01063 722 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 163 IPR027417 -
Eupl06g01063 722 FunFam GTP-binding protein TypA 422 530 - -
Eupl06g01063 722 FunFam GTP-binding protein TypA 599 685 - -
Eupl06g01063 722 SMART ras_sub_4 4 171 - -
Eupl06g01063 722 PRINTS Transforming protein P21 ras signature 30 46 - -
Eupl06g01063 722 PRINTS Transforming protein P21 ras signature 109 122 - -
Eupl06g01063 722 PRINTS Transforming protein P21 ras signature 7 28 - -
Eupl06g01063 722 PRINTS Transforming protein P21 ras signature 47 69 - -
Eupl06g01063 722 Gene3D bipa protein 599 714 IPR042116 -
Eupl06g01063 722 FunFam Rho family GTPase 4 169 - -
Eupl06g01063 722 CDD BipA_III 421 498 IPR047043 -
Eupl06g01063 722 CDD Rop_like 6 164 - -
Eupl06g01063 722 Gene3D - 504 598 - -
Eupl06g01063 722 SMART rab_sub_5 7 171 - -
Eupl06g01063 722 Pfam Ras family 8 164 IPR001806 GO:0003924|GO:0005525
Eupl06g01063 722 Gene3D - 6 162 IPR027417 -
Eupl06g01063 722 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 162 310 IPR000795 GO:0003924|GO:0005525
Eupl06g01063 722 FunFam Elongation factor family protein 311 415 - -
Eupl06g01063 722 CDD BipA_TypA_II 317 414 IPR047042 -
Eupl06g01063 722 NCBIfam translational GTPase TypA/BipA 164 714 IPR006298 GO:0003924|GO:0005525
Eupl06g01063 722 Pfam Elongation factor Tu domain 2 331 404 IPR004161 GO:0005525
Eupl06g01063 722 FunFam GTP-binding protein TypA 504 598 - -
Eupl06g01063 722 SUPERFAMILY EF-G C-terminal domain-like 419 502 IPR035647 -
Eupl06g01063 722 Gene3D Translation factors 312 415 - -
Eupl06g01063 722 Gene3D Elongation Factor G (Translational Gtpase), domain 3 422 706 - -
Eupl06g01063 722 ProSiteProfiles small GTPase Rab1 family profile. 2 274 - -
Eupl06g01063 722 SMART rho_sub_3 9 168 IPR001806 GO:0003924|GO:0005525
Eupl06g01063 722 Pfam Elongation factor G C-terminus 512 594 IPR000640 -
Eupl06g01063 722 Gene3D - 163 309 IPR027417 -
Eupl06g01063 722 ProSiteProfiles small GTPase Rho family profile. 1 194 - -
Eupl06g01063 722 ProSiteProfiles small GTPase Ras family profile. 2 324 IPR001806 GO:0003924|GO:0005525
Eupl06g01063 722 SUPERFAMILY EF-G C-terminal domain-like 513 629 IPR035647 -
Eupl06g01063 722 SUPERFAMILY Translation proteins 260 414 IPR009000 -
Eupl06g01063 722 NCBIfam small GTP-binding protein domain 7 157 IPR005225 GO:0005525
Eupl06g01063 722 NCBIfam small GTP-binding protein domain 166 255 IPR005225 GO:0005525
Eupl06g01063 722 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 319 IPR027417 -
Eupl06g01063 722 PANTHER RHO FAMILY GTPASE 5 164 IPR003578 GO:0005525|GO:0007264
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01063 Eupl-Chr6 17403946 17439632 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01063 148 237 Eukaryotic Initiation Factors Gene Family AT1G56070 39.130 1.70e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01063 K06207 - nnu:104599514 1014.99