Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01050 ATGGAAGGATTACTCGACCTTAATAACACCATCATCGATGACGACGCTGCTGCTGCTACTCCCGAAAGCGCTGCCGCACCGCTTGCTTCTTCTGCTTCTTCGGCTGTTTGTTTGGAGCTCTGGCACGCTTGCGCAGGGCGACTCATTTCGCTTCCAAAGAAGGGGACCGTTGTTGTGTACATGCCACAAGGCCATTTAGAGCAAATTTCTGGGTTCCCATCATCCATGGTTTACGATCTTCCTCCTCACGTCTTCTGCCGCGTTGTCGACGTGAAGCTTCATGTGGAGGAGGCGAGCGATGAGGTTTACGCCCAGGTCTCTTTGGTTCCTGAAACTGAGATTGAGCAGAAATTGAAGCGAGGAGAGATTGAATTGGAAGGCGAAGAAGAGGAAATTGAAGGTGCGAGTAAGTCGACGCCTCATATGTTCTGCAAGACCCTCACGGCTTCTGATACGAGCACACATGGAGGTTTCTCGGTTCCTCGACGAGCTGCCGAAGACTGCTTTCCTGCACTGGATTATAAACAGCAAAGGCCTTCACAGGAGCTTATAGCTAAAGATTTACATGGCATCGACTGGAGGTTTAGGCATATCTACAGGGGTCAGCCACGGAGGCATTTGCTTACAACTGGGTGGAGTGCGTTTGTCAATAAAAAGAAGCTCGTCTCTGGGGACGCTGTGCTCTTTCTTAGGAGTGACAATGGGGAATTGAGATTGGGAGTCAGGAGGGCAGATCAAGTTAAATGCAGTGTTCCTTTGTCGGTTCTCTGTAGCCAGAGTTTGAATGTTGGCAACCTAACGGCTGTGGCTCGGGCTGTATCTGCAAAAAGTGTCTTCTATATTTACTATAATCCGAGGGCAAGCCCGTCGGACTTCATAATACCTTTCCGTAAATTCTCAAAAAGCTTTGATCATTCATTTTCTATTGGAATGAGGTTCAAAATGCGATTTGAAAGTGAAGATGCAGCAGAGCGAAGATATACAGGACTGATAACTGGGATAAGTGATATGGACCCTGTTAGATGGCCTGGTTCTAAATGGAGATGCCTATTGGTAAGGTGGGACGATGTTGTCGAGATGAATCGACACAATAGAGTTTCTCCATGGGAGATTGAGCCATCTTGTTCGGTTTCAGGTTCCAGCAGTTTGTCGGCACCTGGTTCGAAGAGAACCAGGATTCATCTGCTTTCAACCAAACCAGATGTTACAGTTCCAAATGGGACTGGATTTTCAGACTTTGGGGAATCTTTAGGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTAGGTTTTAACACTCCTTGCGATGGTATTGATGTGCTGAATCATCATCCATCTCAAATAAGGAGATGCATTCCCAGTTCAAACAATTCCGGGATGGCTCCAAAAGGAAGTGGTGTCACAATCCCGCCAGAAAATTCTAATATCTCCTATAAGGGCACAGACTTTGGAGAATCTATTCGATTCCATAAGGTCTTGCAAGGTCAAGAAATATTTCCGAAACCACTGTACGGAAGAGCTTCAATTGATAACCGGGTTCAGGATAATGGTGTGTTTGGAATCTTTGATGGGGTTCACAGGTGTAGTGGTGGAAGTGGATGGTCTGCTAGGATGCAGGGCTACAATGCTAATGTGCAACCATCTATACCAACTGTACAGGTGTCCTCGCCATCTTCCGTGCTAATGTTCCAACAAGCCAGTACTCACCTTCAGACTGGGTTTCCCATCCATGATCAAAAGGGGCAGAAGGGCAATTACTGTGGTTCATTTGATGGTTCTGAACCTGTGGGTGGAAAACCCACATCATCCTCACCTTTTGGTTGCCGCCATAAGGCGGAAGATATACGAAACGTGTATTCCCCTGATCTTTTTAAAGAGCATAACCAACTAGGTTCTCTGCTTCCAACTGCCACCCTTGTAACTCAAACAGCTTCTAGTGGGCCTGCTGGTAAAAGTGGTTGCAGACTCTTTGGTTTTCTCTTAACAGAGGAAACTCATGTAGCAAATGAAGAGGATGCAACCACTCCAGTTACATCTCCATCTTCAACTGAGAACTTGAAGCTGGACAACTCTGTTTCACCATCTGCTGAAAAACTGTCGCATTTGAAGCCTCCTAGCTCAACCAAAACATTGGGATACAGTTGCACCAAAGTTCACAAGCAAGGAAGTGTTGTAGGCAGGGCCATTGATCTCACAAAGCTTGATGGGTATGATGATCTGATGAGCGAGTTGGAGCGGCTGTTCAATATGGAAGGGCTTTTGAGTGATCCCAAGAAAGGATGGCAAGTTGTTTACACAGATCATCAGGATGATATGATGCTTGTTGGAGATGATCCATGGCGGGAATTCTGCAACATTGTTTCGAAAATTTTGATATATGCACAATGA 2388 0.4602 MEGLLDLNNTIIDDDAAAATPESAAAPLASSASSAVCLELWHACAGRLISLPKKGTVVVYMPQGHLEQISGFPSSMVYDLPPHVFCRVVDVKLHVEEASDEVYAQVSLVPETEIEQKLKRGEIELEGEEEEIEGASKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPALDYKQQRPSQELIAKDLHGIDWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRSDNGELRLGVRRADQVKCSVPLSVLCSQSLNVGNLTAVARAVSAKSVFYIYYNPRASPSDFIIPFRKFSKSFDHSFSIGMRFKMRFESEDAAERRYTGLITGISDMDPVRWPGSKWRCLLVRWDDVVEMNRHNRVSPWEIEPSCSVSGSSSLSAPGSKRTRIHLLSTKPDVTVPNGTGFSDFGESLGFQKVLQGQEILGFNTPCDGIDVLNHHPSQIRRCIPSSNNSGMAPKGSGVTIPPENSNISYKGTDFGESIRFHKVLQGQEIFPKPLYGRASIDNRVQDNGVFGIFDGVHRCSGGSGWSARMQGYNANVQPSIPTVQVSSPSSVLMFQQASTHLQTGFPIHDQKGQKGNYCGSFDGSEPVGGKPTSSSPFGCRHKAEDIRNVYSPDLFKEHNQLGSLLPTATLVTQTASSGPAGKSGCRLFGFLLTEETHVANEEDATTPVTSPSSTENLKLDNSVSPSAEKLSHLKPPSSTKTLGYSCTKVHKQGSVVGRAIDLTKLDGYDDLMSELERLFNMEGLLSDPKKGWQVVYTDHQDDMMLVGDDPWREFCNIVSKILIYAQ* 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01050 795 MobiDBLite consensus disorder prediction 669 705 - -
Eupl06g01050 795 Pfam Auxin response factor 270 350 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Eupl06g01050 795 MobiDBLite consensus disorder prediction 453 473 - -
Eupl06g01050 795 Gene3D - 306 381 - -
Eupl06g01050 795 ProSiteProfiles PB1 domain profile. 713 795 IPR000270 GO:0005515
Eupl06g01050 795 FunFam Auxin response factor 306 378 - -
Eupl06g01050 795 MobiDBLite consensus disorder prediction 671 705 - -
Eupl06g01050 795 Coils Coil 111 138 - -
Eupl06g01050 795 SUPERFAMILY CAD & PB1 domains 716 788 - -
Eupl06g01050 795 CDD B3_DNA 141 243 IPR003340 GO:0003677
Eupl06g01050 795 ProSiteProfiles B3 DNA-binding domain profile. 143 245 IPR003340 GO:0003677
Eupl06g01050 795 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 34 794 IPR044835 GO:0003677|GO:0006355|GO:0009725
Eupl06g01050 795 SUPERFAMILY DNA-binding pseudobarrel domain 136 252 IPR015300 -
Eupl06g01050 795 SMART B3_2 143 245 IPR003340 GO:0003677
Eupl06g01050 795 Gene3D - 710 795 - -
Eupl06g01050 795 FunFam Auxin response factor 141 245 - -
Eupl06g01050 795 Pfam B3 DNA binding domain 143 244 IPR003340 GO:0003677
Eupl06g01050 795 Gene3D - 141 244 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01050 Eupl-Chr6 17243666 17262061 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01050 32 795 B3 DNA Binding Superfamily AT5G60450 44.204 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Eupl06g01050 B3 4.8e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01050 K14486 - msin:131241117 1008.44