Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01041 ATGGCAGGTGAAGCACTCACAAATGCTTTCACTCAGAACCCAATTGTTGGATCCAATCCTCCCATCATTAAAAAGAAGAGAAACCTACCAGGAACCCCAGATCCTGAAGCGGAGGTGATCGCGTTATCTCCGAAGACTCTCATGGCTACCAATAGATTCCTGTGTGAGATTTGTGGGAAGGGATTTCAGAGAGATCAAAATCTTCAACTACATCGGCGTGGACATAACCTTCCATGGAAGCTCAGGCAAAGGAGTAGCAAGGAACCAAAGAAACGGGTCTATGTGTGCCCAGAGAAGACCTGTGTTCACAACCACCCTTCAAGGGCTCTTGGAGACCTCACTGGTATAAAGAAGCACTTCTGTCGGAAACACGGCGAGAAGAAGTGGAAGTGTGAGAAGTGCTCGAAACGGTATGCGGTGCAGTCAGATTGGAAGGCTCATTCGAAGATCTGCGGCACTAAGGAATACAAATGCGATTGTGGGACTCTATTTTCGCGGCGAGATAGCTTCATCACTCATAGAGCCTTCTGTGATGCCTTAGCTGAAGAAACAGCAAGGGTTACTGCAGCAACTAACATAAACCACGCGATGCCCACTGGTAATATCAACTATCAATTTATGGGATCTTCATTAGGACCTAACATGGTACACCATTTCTCTTCTATTTTCAAGCCAATCCCGAGCGACGATGAATCAATTGATCAGACTAGATCGGGACTCTCTCTATGGATGGGCCAAGGATCCCAAATTAGTGAATCAATAAGCAATAATAACCTCCCAGAATTGCATCAAATCGGGTCGGCAAGTTTGGGAACATTGTACAGTAATCCATATGCTTCGTGTTCGAGTCCTCAACTATCAGATAATCAATTAAATTCGGTGTTCGGAAGTAAGTTCTCATCGACCAACACTGGAGAACTAACAAGCACCTCACTTCCGCTCGGCAACGTTAAGGAGGTTGGTAGTCAACTTGTTAGTGCTCCTTCCTTATATAGCACTCAAGTACACTACCAGCAAGCAACATCGGCGAACATGTCCGCCACCGCTTTATTACAAAAAGCTGCCCAAATAGGTGCAACTTCCACCAGCCCATCACTCCTTGGGAGCATTGAGGTGAAGTGCAACAACAATCATATTCAAGGTGGAAACAAATACAATGGGTTTTTTGGTCCAAACTCAACACCCACTGATCTTGGAATCGATCTAATGAATTCTGTAGACAATATGTCCACATTTAACCAGTTGCAAATGTACCCCGTAAAGCGCCGTAACACTCAGAAGGACGATACAGGAGGGGAAACAAGGGATTTCTTAGGGGTTGGTGTTCAAACAATCTGTGCATCATCGATCAATGGATGCATTTGA 1365 0.4513 MAGEALTNAFTQNPIVGSNPPIIKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLRQRSSKEPKKRVYVCPEKTCVHNHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDALAEETARVTAATNINHAMPTGNINYQFMGSSLGPNMVHHFSSIFKPIPSDDESIDQTRSGLSLWMGQGSQISESISNNNLPELHQIGSASLGTLYSNPYASCSSPQLSDNQLNSVFGSKFSSTNTGELTSTSLPLGNVKEVGSQLVSAPSLYSTQVHYQQATSANMSATALLQKAAQIGATSTSPSLLGSIEVKCNNNHIQGGNKYNGFFGPNSTPTDLGIDLMNSVDNMSTFNQLQMYPVKRRNTQKDDTGGETRDFLGVGVQTICASSINGCI* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01041 454 FunFam protein indeterminate-domain 5, chloroplastic-like 107 186 - -
Eupl06g01041 454 MobiDBLite consensus disorder prediction 1 31 - -
Eupl06g01041 454 SUPERFAMILY beta-beta-alpha zinc fingers 52 149 IPR036236 -
Eupl06g01041 454 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Eupl06g01041 454 FunFam protein indeterminate-domain 12-like 32 100 - -
Eupl06g01041 454 Gene3D Classic Zinc Finger 49 76 - -
Eupl06g01041 454 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 75 IPR013087 -
Eupl06g01041 454 MobiDBLite consensus disorder prediction 1 18 - -
Eupl06g01041 454 Gene3D Classic Zinc Finger 87 177 - -
Eupl06g01041 454 SMART c2h2final6 94 124 IPR013087 -
Eupl06g01041 454 SMART c2h2final6 129 149 IPR013087 -
Eupl06g01041 454 SMART c2h2final6 53 75 IPR013087 -
Eupl06g01041 454 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 443 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01041 Eupl-Chr6 17148621 17151046 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01041 19 454 IDZ Gene Family AT1G03840 51.400 1.12e-142 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl06g01041 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01041 K25870 - tcc:18608782 684.485