Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01039 ATGGATTTCTATCAATCCCAGAACCACAAACACACACCCAAACGCAACAAGAAACGTCTCACCCAAGACCAGGTGAGGCTCTTAGAGACTTGCTTCAACCACGACAAGAAGCTCGAACCGGAGCGCAAGATACAGCTTGCACATGACCTCGGTCTGCAGCCGAGGCAGGTTGCGATTTGGTACCAAAACAAACGAGCGCGCTGGAAGACTCAGACCCTTGAGCTTGACTACAAGGCACTTCAGCTAAGGCTAGATAACGTCTTAGCGGATAAGAGGAGGCTCGAGAGAGAGGTGGGAAGGCTCAGTGGGGAGTTACAGAAGGCTCAGGAAATGCTACTTGGGCTGAACCCCATTCCGGGCATTCCCCCACCTCTCTCTTCTCTATCTACATCTTGCGACGACGACGGAAATTCAAGTTTGCCCGGTGATGCAAATTGTTGTTGGGAGAATGCTGGGGTGTTGCAGGTTGAGGAGTTCTACTCTTGTCTGATGGGTACAGAGGTTCAAACCGCAAAACTGAACAGTCTTGCTCACTTTGCTCCATCAAATTCCTGA 555 0.5063 MDFYQSQNHKHTPKRNKKRLTQDQVRLLETCFNHDKKLEPERKIQLAHDLGLQPRQVAIWYQNKRARWKTQTLELDYKALQLRLDNVLADKRRLEREVGRLSGELQKAQEMLLGLNPIPGIPPPLSSLSTSCDDDGNSSLPGDANCCWENAGVLQVEEFYSCLMGTEVQTAKLNSLAHFAPSNS* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01039 184 FunFam Homeobox-leucine zipper protein ATHB-52 7 73 - -
Eupl06g01039 184 CDD homeodomain 14 71 IPR001356 GO:0003677
Eupl06g01039 184 Gene3D - 13 76 - -
Eupl06g01039 184 MobiDBLite consensus disorder prediction 1 20 - -
Eupl06g01039 184 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 10 133 IPR045224 GO:0003700
Eupl06g01039 184 SUPERFAMILY Homeodomain-like 5 72 IPR009057 -
Eupl06g01039 184 Coils Coil 77 111 - -
Eupl06g01039 184 PRINTS Lambda-repressor HTH signature 42 51 IPR000047 GO:0003677
Eupl06g01039 184 PRINTS Lambda-repressor HTH signature 51 67 IPR000047 GO:0003677
Eupl06g01039 184 ProSiteProfiles 'Homeobox' domain profile. 11 71 IPR001356 GO:0003677
Eupl06g01039 184 SMART HOX_1 13 75 IPR001356 GO:0003677
Eupl06g01039 184 Pfam Homeodomain 14 69 IPR001356 GO:0003677
Eupl06g01039 184 ProSitePatterns 'Homeobox' domain signature. 46 69 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01039 Eupl-Chr6 17138956 17139968 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01039 7 165 Homeobox Transcription Factor Family AT5G53980 42.767 6.53e-33 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Eupl06g01039 Homeodomain 1.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01039 - - nnu:104599481 219.935