Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01032 ATGCTTGCTGTGCCATCTTTGAGAAGCTCTAACGATGGAAGGGAGGGAGAAGTGGAGAGTTTTCCGATCGAGACCGACGACTTCTCCGATGGATTCGCCGGTGGGAATTTGCTGGATAGTATCAATTTCGATGATTTCTTCGTCGGCATCGACGATGGATATACGTTGCCAGATTTGGAGATGGACCCAGAAATGCTGGCCGAATTTTCTGTTAGTGGAGGTGAGGAATCGGAGATGAACGTATCGGTGTCGGGCCTGTCGGCTGGAAAGGTAGAGGAGAACGGGAGGAGAGAGGAGGAAGATAAGGGTTCGGGTTCGGGTTCGGGTTCGGGTTCAGGTTCGAGTTCTAGTCCAGGAGAAGAAATTGTGAGCAAGAGGGATGAATCTGTTACAGCGAATCCGTCGCAGAAGATGGCTGATAGAGGTCGAAAATCGACGATGCAGTCAAAAGATTCCAAAGGTTCGCAAGGAAAGCGGAAAGTTAAGGTGGATTGGACTCCAGAGCTGCATAGGCGGTTTGTTCAAGCAGTGGAGCAGCTGGGTGTGGATAAGGCAGTCCCCTCAAGGATTTTAGAGCTTATGGGAATCGATTGTCTCACTCGCCACAACATTGCTAGTCACCTCCAAAAATATCGGTCACATAAAAAACATTTGCTAGCCAGGGAGGCGGAGGCGGCAAGTTGGAGTCAAAGACGGCAAATGTATGGTGGTGCTGGAGGAGGAAGCAAGAGAGAAATGAGCCCTTGGTTAGCACCAACAATGGGTTTCCCTCCCCCTAATCCCCTACCGCCTTTCAGGCCCCTTCATGTGTGGGGACATCCGACCGTCAACCAGTCCATGATGCACATGTGGCCGAAACATCTCGTTCATTCCCCATCTCCACCGCCACCACCATGGGCATCACCATCTCCTCCTCCTCCACCACCACCAGACCATTCATATTGGCATCCACACCATCAACGTGTCCCAAATGCTCTTACACCAGGGACTCCTTGCTTCCTTCAGCCACTAGCAACAACGAGGTTTCCAACTCCACCTGTCCCGGGAATTCCACCCCATGCCATGTATAAAGCAGACCACGGCATTGGTGTCCCAAGTGGGCAATCAGACTCCCACCATCCATTTGACTTTCATCCGTCAAAAGAGAGCATAGATTCAGCTATTGGAGATGTTTTATCAAAACCATGGCTGCCACTTCCTCTTGGACTAAAACCTCCATCTCTTGAGAGTGTGATGGTGGAACTGCAACGTCAAGGAATTTCCAAGATACCACCCACCTGTGCTTGA 1287 0.5074 MLAVPSLRSSNDGREGEVESFPIETDDFSDGFAGGNLLDSINFDDFFVGIDDGYTLPDLEMDPEMLAEFSVSGGEESEMNVSVSGLSAGKVEENGRREEEDKGSGSGSGSGSGSSSSPGEEIVSKRDESVTANPSQKMADRGRKSTMQSKDSKGSQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILELMGIDCLTRHNIASHLQKYRSHKKHLLAREAEAASWSQRRQMYGGAGGGSKREMSPWLAPTMGFPPPNPLPPFRPLHVWGHPTVNQSMMHMWPKHLVHSPSPPPPPWASPSPPPPPPPDHSYWHPHHQRVPNALTPGTPCFLQPLATTRFPTPPVPGIPPHAMYKADHGIGVPSGQSDSHHPFDFHPSKESIDSAIGDVLSKPWLPLPLGLKPPSLESVMVELQRQGISKIPPTCA* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01032 428 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 157 216 IPR017930 -
Eupl06g01032 428 NCBIfam myb-like DNA-binding domain, SHAQKYF class 160 215 IPR006447 GO:0003677
Eupl06g01032 428 MobiDBLite consensus disorder prediction 1 29 - -
Eupl06g01032 428 FunFam Two-component response regulator 156 219 - -
Eupl06g01032 428 MobiDBLite consensus disorder prediction 143 163 - -
Eupl06g01032 428 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 427 IPR044825 GO:0003700|GO:0045893
Eupl06g01032 428 Pfam Myb-like DNA-binding domain 163 212 IPR001005 -
Eupl06g01032 428 MobiDBLite consensus disorder prediction 289 313 - -
Eupl06g01032 428 MobiDBLite consensus disorder prediction 128 142 - -
Eupl06g01032 428 Gene3D - 157 218 - -
Eupl06g01032 428 MobiDBLite consensus disorder prediction 105 120 - -
Eupl06g01032 428 SUPERFAMILY Homeodomain-like 158 217 IPR009057 -
Eupl06g01032 428 MobiDBLite consensus disorder prediction 289 321 - -
Eupl06g01032 428 MobiDBLite consensus disorder prediction 71 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01032 Eupl-Chr6 16931293 16935856 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01032 27 293 G2-like Transcription Factor Family AT5G44190 47.059 6.35e-60 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Eupl06g01032 Myb_DNA-binding 1.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01032 - - nnu:104599471 564.688