Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01022 ATGGCTTCTTTGTTTAAGGATCCAAACAAGCTTTCAGCATATCGGGATAGAAGATTTTCTGGAACACAAGAAGAGTTTGAACATGCACTTCTGACCTCAACAACTGTTTATATTGGGAATATGTCCTTTTACACAACAGAAGAGCAAGTTTATGAGCTATTCTCTCGAGCTGGAGAGATCAAAAAAATAATCATGGGTTTGGATAAGAACACCAAAACTCCATGTGGCTTTTGCTTTGTTTTATACTATTCTAGAGATGATGCTGAAGACTCAGTAAAGTACATAAGTGGGACGATTCTTGATGATCGTCCAATTCGTGTGGATTTTGATTGGGGCTTTCAAGAAGGAAGGCAATGGGGTCGTGGTCGAAGTGGTGGACAGGTTCGAGATGAATATCGCACTGACTATGATCCTGGTAGAGGTGGTTATGGTAAACTGGTTCAGAGAGAGTTGGAAGCACAGAGGCAGCTAGTAGATTATGGCACAGGGTCTTTGGGCTCTTTCCAGCCAGTTATGCCATCTCATTATGGTAGACATGGTGGAGAACATGGGCATGGGGGTTCTCACAGACATGGTAGAGATTATCATCGCAAACGGCACCGTGAGGATGATCGTCATGCACCTGAGAACTTGAAAAGAACCTCCGATCACGAATCCCGGAGAGCCTCCGATCACGATTCTAGACCAGAAAAGAATCCACGTTTCCGTGAGAGCGGTGACTCTGATGATGAAGATGACGATGATCGGAAACGACGACCTTAG 762 0.4436 MASLFKDPNKLSAYRDRRFSGTQEEFEHALLTSTTVYIGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSRDDAEDSVKYISGTILDDRPIRVDFDWGFQEGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQRELEAQRQLVDYGTGSLGSFQPVMPSHYGRHGGEHGHGGSHRHGRDYHRKRHREDDRHAPENLKRTSDHESRRASDHDSRPEKNPRFRESGDSDDEDDDDRKRRP* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01022 253 MobiDBLite consensus disorder prediction 164 253 - -
Eupl06g01022 253 MobiDBLite consensus disorder prediction 124 138 - -
Eupl06g01022 253 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 2 251 IPR027157 GO:0000339|GO:0005846|GO:0045292
Eupl06g01022 253 CDD RRM_NCBP2 36 113 IPR034148 -
Eupl06g01022 253 MobiDBLite consensus disorder prediction 197 253 - -
Eupl06g01022 253 MobiDBLite consensus disorder prediction 120 141 - -
Eupl06g01022 253 Gene3D - 6 150 IPR012677 -
Eupl06g01022 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Eupl06g01022 253 SUPERFAMILY RNA-binding domain, RBD 29 144 IPR035979 GO:0003676
Eupl06g01022 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Eupl06g01022 253 SMART rrm1_1 35 108 IPR000504 GO:0003723
Eupl06g01022 253 FunFam Nuclear cap-binding protein subunit 2 4 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01022 Eupl-Chr6 16751428 16760890 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01022 34 109 Eukaryotic Initiation Factors Gene Family AT2G23350 26.316 4.14e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01022 K12883 - pvy:116113355 407.142