Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01016 ATGGAGAACTTCCACAATTACGACAGCAACGACGCTCATCTACCGCCTGGTTTTCGATTCCACCCAACAGACGAAGAACTCATCACATACTACCTCATCAAGAAGGTGCTCGACAGCAGTTTTACAGGCAGAGCTATAGCCGAAGTTGACCTAAACAAATGTGAACCATGGGAGCTTCCTGGAAAAGCAAAGATGGGAGAGAAAGAGTGGTATTTCTTCAGCCTTCGTGATCGAAAGTACCCAACTGGGCTTCGAACAAACAGGGCGACTGAAGCTGGGTACTGGAAAGCAACGGGGAAAGACAGGGAGATATACAGTTCAAGAACATGTTCTCTTGTGGGGATGAAGAAGACACTGGTTTTCTATAGAGGAAGAGCTCCAAAGGGGGAAAAAAGTAACTGGGTCATGCATGAATATCGCCTTGAAGGGAAGCTTTCTTACCATTATCTCTCCAGAAGCTCCAAGGACGAGTGGGTAATCTCGAGGGTGTTTCAGAAGAGTGGAGGAGGAAGTGGTGGTGGTGGTGGAGGGAAGAAGACCCGCCTCAGCTGTGGTGGCGGTCTCTACTCGGACATTGGATCTCCGTCGTCAACGTCGCTTCCACCGCTTCTTGATTCGTCTCCCTATGCTGCCAACACCGGCGTGACTGACCGTGATAGCTGCTCTTACGAGAGTGAAAGCGCAAGGGAGCACGTGCCCTGTTTCTCCACCGTTGCTGCCTGCGAATTTTAA 732 0.5014 MENFHNYDSNDAHLPPGFRFHPTDEELITYYLIKKVLDSSFTGRAIAEVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSRTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKLSYHYLSRSSKDEWVISRVFQKSGGGSGGGGGGKKTRLSCGGGLYSDIGSPSSTSLPPLLDSSPYAANTGVTDRDSCSYESESAREHVPCFSTVAACEF* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01016 243 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 196 - -
Eupl06g01016 243 FunFam NAC domain-containing protein 100-like 23 170 - -
Eupl06g01016 243 ProSiteProfiles NAC domain profile. 14 166 IPR003441 GO:0003677|GO:0006355
Eupl06g01016 243 Pfam No apical meristem (NAM) protein 15 141 IPR003441 GO:0003677|GO:0006355
Eupl06g01016 243 Gene3D NAC domain 23 169 IPR036093 GO:0003677|GO:0006355
Eupl06g01016 243 SUPERFAMILY NAC domain 10 166 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01016 Eupl-Chr6 16609187 16611171 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01016 4 238 NAC Transcription Factor Family AT5G53950 61.597 6.24e-108 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Eupl06g01016 NAM 4.1e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01016 - - nnu:104599455 422.935