Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01013 ATGGCTCCCAGAGAGAAAACTAACGGCGTTAAAGTAGCTAAGGGTAACGGTAACGGCAAGGAAGTACATTTCAGAGGTGTGAGGAAGAGACCTTGGGGACGGTACGCAGCCGAGATCAGAGATCCAGGCAAGAAGAGTCGTGTTTGGTTGGGTACGTTCGATACGGCGGAAGAGGCTGCAAGGGCTTACGATGCTGCCGCGAGAGAATTTCGCGGTTCAAAGGCTAAAACTAACTTCCCTCTCCCATCGGAGAACATCAACGACACTAACAACAACAACAGCAACAACCAGAGCCCTAGCCAGAGCAGCACCGTCGAGTCTTCGAGCCGGGAAGGGTTCTCCCCTGCGCCGATCGCTACTCCATCGCCGTTAGATCTTGATCTGCTGCACCGCGCTGGAGGTGGTGGCGGAGGAACCGTTCGATTTCCTTTCCGTCATCCTCATCAGCACTACCAGCATGGAGCTGGAGTTATGCAGACCGGTCATCCTCTCTTTTTCTTTGATACGATCATGCGATCGGAACAGATTAACCAACACCGGCTCAGGTTCGACCCTGCCGCACCTGATTTCCATCACGGTGGGGTTCAGAGTGATTCCGATTCGTCCTCCGTCGTTGATTATAACCATCCCAGCCCGCCGAGGAGAGTTCTTGATCTTGACCTTAACCTCCCTCCTCAGCCCGAGGTTGCTTGA 693 0.5382 MAPREKTNGVKVAKGNGNGKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGSKAKTNFPLPSENINDTNNNNSNNQSPSQSSTVESSSREGFSPAPIATPSPLDLDLLHRAGGGGGGTVRFPFRHPHQHYQHGAGVMQTGHPLFFFDTIMRSEQINQHRLRFDPAAPDFHHGGVQSDSDSSSVVDYNHPSPPRRVLDLDLNLPPQPEVA* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01013 230 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Eupl06g01013 230 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Eupl06g01013 230 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Eupl06g01013 230 Gene3D AP2/ERF domain 22 81 IPR036955 GO:0003700|GO:0006355
Eupl06g01013 230 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 16 206 - -
Eupl06g01013 230 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Eupl06g01013 230 MobiDBLite consensus disorder prediction 185 230 - -
Eupl06g01013 230 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Eupl06g01013 230 MobiDBLite consensus disorder prediction 74 132 - -
Eupl06g01013 230 CDD AP2 23 80 IPR001471 GO:0003700|GO:0006355
Eupl06g01013 230 MobiDBLite consensus disorder prediction 78 115 - -
Eupl06g01013 230 FunFam Ethylene-responsive transcription factor 2 22 81 - -
Eupl06g01013 230 MobiDBLite consensus disorder prediction 1 25 - -
Eupl06g01013 230 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01013 Eupl-Chr6 16560361 16562350 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01013 1 225 AP2-EREBP Transcription Factor Family AT5G44210 45.188 1.74e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Eupl06g01013 AP2 2.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01013 K09286 - nnu:104599451 268.47