Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01011 ATGGCTTCTTCTCGCGAAGGCCACTATAGAGGCGTGAGAAAGAGGCCGTGGGGAAGATACGCCGCTGAAATAAGAGATCCGTGGAAGAAAACTAGGGTTTGGTTGGGTACTTTTGACACTCCTGAAGAAGCTGCCATGGCTTACGATGGAGCTGCGAGATCTCTTAGAGGTGCTAAGGCGAAAACTAATTTTCCTGCTCCACCTAGTGCCCTTTCGTTCGATCTAAACCTTCCGTCTGACCGTTGGAGTGGTCCGACCGGTGGTTTGGTTCTTGGAGAGTTTTTACAGACTCGTATTCTTAAGGGCTGCGACGACGAGGAATCTACAAAGGAAAGAGATGTTTCAGGTACGGTTTCGGTGGCTGAACCGGTGGCGCCACCACAACAAGTACTGCCACCATCGTTTTTTGGGATTGTTAGACGTGGTTTAGCGATTGATCTGAACGAGCCACCTCCTACAACACCGCCTTTGTGGTCGAGTTAG 483 0.5031 MASSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAAMAYDGAARSLRGAKAKTNFPAPPSALSFDLNLPSDRWSGPTGGLVLGEFLQTRILKGCDDEESTKERDVSGTVSVAEPVAPPQQVLPPSFFGIVRRGLAIDLNEPPPTTPPLWSS* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01011 160 SMART rav1_2 8 71 IPR001471 GO:0003700|GO:0006355
Eupl06g01011 160 CDD AP2 8 66 IPR001471 GO:0003700|GO:0006355
Eupl06g01011 160 Pfam AP2 domain 8 57 IPR001471 GO:0003700|GO:0006355
Eupl06g01011 160 FunFam Ethylene-responsive transcription factor 2 8 66 - -
Eupl06g01011 160 ProSiteProfiles AP2/ERF domain profile. 8 65 IPR001471 GO:0003700|GO:0006355
Eupl06g01011 160 Gene3D AP2/ERF domain 8 66 IPR036955 GO:0003700|GO:0006355
Eupl06g01011 160 PRINTS Ethylene responsive element binding protein signature 31 47 IPR001471 GO:0003700|GO:0006355
Eupl06g01011 160 PRINTS Ethylene responsive element binding protein signature 9 20 IPR001471 GO:0003700|GO:0006355
Eupl06g01011 160 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 8 93 - -
Eupl06g01011 160 SUPERFAMILY DNA-binding domain 8 66 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01011 Eupl-Chr6 16535875 16537526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01011 1 152 AP2-EREBP Transcription Factor Family AT1G28360 48.677 7.97e-43 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Eupl06g01011 AP2 2.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01011 - - vvi:100243417 226.868