Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01003 ATGTCGAATATCTGTGCAGAACACCACCATTCTTATCCACTCTTCTCCACCAAGAAAACTGTCCGAGACATCGATCTCCCACCCCGGAAGCTCCTCAATCGCCGATCGAACCTCCCCATTTCAATCTCTGATCACTTCCTTGATGAAAAACCCACATCAGAAACAACACTTCTACACAAGTTCTTGCCTTATTGTAATGGCGAAGATGAAGAATCAGACGAGTTCAGAATGTACGAATTCAAGGTGCGTCGATGCATGCGCAGTCGTAGCCACGACTGGACTGACTGCCCTTTTGCTCATCCTGGAGAGAAAGCCCGACGGAGAGATCCCCGACGGTTTCATTACTCTGGTAATGCTTGCACTGATTTCCGTCGGGGATGTTGTCCTCGTGGCGATTCTTGCGAGTTCGCTCATGGGGTTTTCGAGTGCTGGCTCCATCCAGCTCGTTACAGGACTCAAGCATGTAAAGATGGTCAGAATTGTAAGAGAAAGGTTTGTTTCTTCGCTCACACCGCTCAACAGCTTCGTCTCTTGCCTTTTTGTCATTCTGTTGCGTCTTCTCCAACTTCTACGTTAATGGGTCTCTCTCATTTATCTCCTCCTTTGTCCCCAACTTTCTCTCCTCCGACGAACCAATCTCTTACTGGTGTTTTAAGTTATAAGAATGCGTTACGGAAGCTTGTGAGCTCCTTGGAAGCTATGGATCTCAGTGAAGCTTCTCCTACTGGTTCTGTTAATGGAAATCTTTCATGGGGCAGTGGTGTTTCGACTAATTGTGCAGATCAACAACAGTTCATTCTGTCTCCTTGTACTCCATTGGATTCTGGGTCGAGAGATTTTTTTAATGAAGATGTATTGAGCAACAATGGTGGGTCCTGTCCTGATCTGGAGTGGGTAAACGAGCTTGTGATGTAG 915 0.4656 MSNICAEHHHSYPLFSTKKTVRDIDLPPRKLLNRRSNLPISISDHFLDEKPTSETTLLHKFLPYCNGEDEESDEFRMYEFKVRRCMRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGNACTDFRRGCCPRGDSCEFAHGVFECWLHPARYRTQACKDGQNCKRKVCFFAHTAQQLRLLPFCHSVASSPTSTLMGLSHLSPPLSPTFSPPTNQSLTGVLSYKNALRKLVSSLEAMDLSEASPTGSVNGNLSWGSGVSTNCADQQQFILSPCTPLDSGSRDFFNEDVLSNNGGSCPDLEWVNELVM* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01003 304 SMART c3hfinal6 114 140 IPR000571 GO:0046872
Eupl06g01003 304 SMART c3hfinal6 149 172 IPR000571 GO:0046872
Eupl06g01003 304 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 119 139 IPR000571 GO:0046872
Eupl06g01003 304 PANTHER UNKEMPT FAMILY MEMBER 69 303 IPR045234 -
Eupl06g01003 304 Gene3D - 111 179 - -
Eupl06g01003 304 ProSiteProfiles Zinc finger C3H1-type profile. 115 141 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01003 Eupl-Chr6 16342783 16344054 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01003 62 220 C2H2 Transcription Factor Family AT5G12850 49.425 4.41e-52 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Eupl06g01003 zf-CCCH 4.8e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01003 K23047 - nnu:104599442 373.244