Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01001 ATAACTAACCGTTCCCAGACATTTCGTCCCTATGAGGTAGAGAGAGAGGAACAGCTAGCGCTGCATACACCAGCAATGCCTTCCACCGCCGCCGCCTCCTCCTCTTCAGACGATGACATGCCGGACACCACCGAAACCTCCGATAAGGGTTCGGGTTCCGAACTTGAAAACAGCGACGGTGATTGCGTAGAAGAGGAGGAAGAGGAAGTAGAAGAGGAAGAGGAAGAGGAAGTAGAAGAGGAAGAAGAAGAGGAATTAGAAGAGGAAGAGGAAGAGGAAGATGTGGACGAAGAAAAAAGTGCAGATTTATCAGATTCCCCAACCGCAGTCAACGATGATCGGAACGATTCTAGTCAAGAAATCGAGTCTGAGGGGCACAATGAGGTCATGAGGTCAGAAAAATCCCAAGTGAGTCTTGCTTCAGATGCCCATGGCATAGAAGATAGTGGTGGCCATTGCAATTCTCTTAATCTGACACAAGGCAAGAAGCTATCACATGTAAATGATGGGGACTCTAAGCCTCAAATTTTGGGTAAACTTCTGGTTTCATCTGAAAATAATGGGTTTCCAGAAGCCGGGCCAGAAAAGAAAGTTCCTATTGAGGCTTCAGAAAATGTACAGAAAGACTATGATGAAGCTCATGGTGGTAATCAGGCCCATTTAAGTAACAGTAACTCCATGGATGCTGACAACACCAAATCTTCGTGCTTTAATGAGAAAGAGGTAGCTGCTGAGACACACATGAGAGATGGCTCTGGTGAAGTACTGTGTACTAGTGTTTTATATTCTGAGGAAGAAAGCAAGCAAATGGACATGCAACCAGGGGAGGACATCAAGGAAAGGGCACCAAGTGCAATTACTCCACAGCTTAGGCCTAGAAGTTTGTCCCCTGGTGCTGAATTTGAGGACAGAAACAAAAGACCTGCAATTTTATGCGACTTTTTTGCTAGAGGTTGGTGCATCAAGGGGAGTTCATGTAGGTTTCTTCATCAGAAAGATGGTGCCGAGGGAGATGTGGCCGTTGCAAGTTCCATAGGTTTGAGGCAAGAAGCTGAGAAATCAAGAGTTTCCTCTTTTCCTGAGCCACTGGCTGCGTCAGTTGCAAATGATCCTTCATCAAAATCACATTTCCCTTTAGAAAGGGTCATACTCGGGGAGCGTGGAGAAAGCCAAAAAGGGCATCAGTTCTCTGAAGACCATAGACTGTCGTCATTTCACAGAGAAGATTTATCTTCGGGCATTGCACAGAGGGAGAGTGGCTCAACGTCGGTAGTCCACCATGACTTTCAACAATTGCCTTTAACTAGAGGTGATACTATTATATCCTCTTTTAAGGATGTAGGCAGAGAGGGTCTGAGACAGAATCTGTTCCTGGATAAATATAACAGGCATGCTTCACCTGTTATTGATGCTCCTAAATTTGTTAGTCCTGGCGGAGGGTGGGCAGCTAATCCTTCTTCGAGTGAATTTCAATCATCTGGGATTCCTTTGCTTTATGATAACCTGAATCCTCATTCTGACCTCAAGGATAATAAGAGATCAGTTGGTGAAGAATTTATGAAAGGATATCCTTTAGCCAGGAATAACTCAGTTTCCGAATATAGATTTTTTTCAAGTGGCTCAGTTACATCATTGAGCACTTACGGAAACAGCAACAATTCCTTTTCTTATGAAAGAGGTATTGTGGAACCGATTAGTCTAAAACGGGATAGTCATTCTATGATCTATGGTGCTCATACGTCACCAGGATTCAGTAGTTCTTTGAACTCAAATTTCAACATTCCTCTTCCGTCAACAGGCATCTCACCTTCCCAAGGCTCTTCCCCCTTGAGATCCCACAAGTCTTTGGATAATGATCGAGGATATTATGTTTCTAGATCTTCTTCGCTGCCTCGAAGCTCTTCCTCACCATTCTACTCTAGGCCTGAGCAAGAAAACTTGCATCTGCACAATGTTCCAGGGGATGCACCTGTTTCTACTGGACATAAAATACAATCCACTACAAATGATTGGGAGCCCTCTGTACCTTTCCGACCATCCTTTATTTTCCCCTCGACAATTATATCATCTCCACGAAGCCAATACGACCCCCTTCTTGATAGCATTGAGGCACCTAATGGGGGTGATATTTCCTTTCAGTCTTCTTCCTTTAGCCAAGGGGCACCCATCCAGAATACATCACATCCGCAGACAAATGGTGATTTTGTTTCTTTGCACCAACAACCCCAGCATGGTGTATCAGACAAGAATATGTATACTCATGGCATAGGTACACATATGTCTGCTGCAGAAGCTACTGGAACTCATGTGGCTGACCAAGAAAATAAGAGTTCTATACCTAAAGAAGAGAACCCCTTGAAGCCCGGTCATGTTGGAAATGCTTCAGAGGCCAATGAAGTGGATCTTGATCATAATAATAGAAATCAAACTGATGGGGGTAGACACAACAAGGAATCTAAAATGCTGAAACTTTTCCGTGCTGCACTTGTGGATTTTGTGAAAGAATTGGTGAAACCATCTTGGCGTGAGGGGCATCTGAGCAAGGATGTGCACAAGACAATAGTTAAAAAAGCAGTTGACAAGGTCCTTAGCACATTACAGGTTCATCAAATTCCAAGTACCACAGAATCAATTAATCAATATCTTTCTTCATCCCGACCTAAACTTGAAAAGCTTGTTGAGGGATATGTTGTTCCTTATCCAGAACTTCCAGATGATAGGTCGCCATTTGGATTGGCCACAGCTCCAAATCACACAGTTACCCAGATTTTTTCTTGGATTGTCACACAGCCCAAATATTAG 2802 0.4372 ITNRSQTFRPYEVEREEQLALHTPAMPSTAAASSSSDDDMPDTTETSDKGSGSELENSDGDCVEEEEEEVEEEEEEEVEEEEEEELEEEEEEEDVDEEKSADLSDSPTAVNDDRNDSSQEIESEGHNEVMRSEKSQVSLASDAHGIEDSGGHCNSLNLTQGKKLSHVNDGDSKPQILGKLLVSSENNGFPEAGPEKKVPIEASENVQKDYDEAHGGNQAHLSNSNSMDADNTKSSCFNEKEVAAETHMRDGSGEVLCTSVLYSEEESKQMDMQPGEDIKERAPSAITPQLRPRSLSPGAEFEDRNKRPAILCDFFARGWCIKGSSCRFLHQKDGAEGDVAVASSIGLRQEAEKSRVSSFPEPLAASVANDPSSKSHFPLERVILGERGESQKGHQFSEDHRLSSFHREDLSSGIAQRESGSTSVVHHDFQQLPLTRGDTIISSFKDVGREGLRQNLFLDKYNRHASPVIDAPKFVSPGGGWAANPSSSEFQSSGIPLLYDNLNPHSDLKDNKRSVGEEFMKGYPLARNNSVSEYRFFSSGSVTSLSTYGNSNNSFSYERGIVEPISLKRDSHSMIYGAHTSPGFSSSLNSNFNIPLPSTGISPSQGSSPLRSHKSLDNDRGYYVSRSSSLPRSSSSPFYSRPEQENLHLHNVPGDAPVSTGHKIQSTTNDWEPSVPFRPSFIFPSTIISSPRSQYDPLLDSIEAPNGGDISFQSSSFSQGAPIQNTSHPQTNGDFVSLHQQPQHGVSDKNMYTHGIGTHMSAAEATGTHVADQENKSSIPKEENPLKPGHVGNASEANEVDLDHNNRNQTDGGRHNKESKMLKLFRAALVDFVKELVKPSWREGHLSKDVHKTIVKKAVDKVLSTLQVHQIPSTTESINQYLSSSRPKLEKLVEGYVVPYPELPDDRSPFGLATAPNHTVTQIFSWIVTQPKY* 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01001 933 SMART c3hfinal6 306 332 IPR000571 GO:0046872
Eupl06g01001 933 MobiDBLite consensus disorder prediction 596 612 - -
Eupl06g01001 933 MobiDBLite consensus disorder prediction 197 215 - -
Eupl06g01001 933 SUPERFAMILY CCCH zinc finger 306 331 IPR036855 GO:0046872
Eupl06g01001 933 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 34 897 - -
Eupl06g01001 933 MobiDBLite consensus disorder prediction 217 233 - -
Eupl06g01001 933 MobiDBLite consensus disorder prediction 766 817 - -
Eupl06g01001 933 MobiDBLite consensus disorder prediction 621 641 - -
Eupl06g01001 933 ProSiteProfiles Zinc finger C3H1-type profile. 306 333 IPR000571 GO:0046872
Eupl06g01001 933 Gene3D - 299 364 - -
Eupl06g01001 933 MobiDBLite consensus disorder prediction 27 53 - -
Eupl06g01001 933 MobiDBLite consensus disorder prediction 1 154 - -
Eupl06g01001 933 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 311 330 IPR000571 GO:0046872
Eupl06g01001 933 Coils Coil 62 101 - -
Eupl06g01001 933 MobiDBLite consensus disorder prediction 800 817 - -
Eupl06g01001 933 MobiDBLite consensus disorder prediction 58 100 - -
Eupl06g01001 933 MobiDBLite consensus disorder prediction 184 233 - -
Eupl06g01001 933 MobiDBLite consensus disorder prediction 596 641 - -
Eupl06g01001 933 MobiDBLite consensus disorder prediction 115 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01001 Eupl-Chr6 16304312 16334611 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Eupl06g01001 zf-CCCH 6e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01001 - - nnu:104608175 630.172