Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00993 ATGCCAGCACAGAAGAGGTCGTCTGAGAATCTGGAGGAGGATTCGCTGCAACGCCACCACTATCCACGACACCAAGGAGGAGAAGAAGAAGAAGAAGGTGAGGATTCCGATGGAAGCCTTTCTTCTAGCGAGGGAGACAAAGACGAATTTATATTAGTAAAATTATCAGACATACGCAAAGAAGTACAATGCCCAATATGCCTAGGTATTATTCGGAAGACAAGAACCGTAATGGAATGCCTTCATCGCTTCTGCAGGGAATGCATTGACAAATCAATGCGACTGGGGAACAATGAATGCCCTGCTTGCCGCACACATTGTGCAAGTCGTCGTTCTTTGAGAGATGATCCAAACTATGATGCACTCATTGCTGCTTTATATCCGGATATTGACAAGTATGAGGAGGAGGAACTGGCTTTTCATGAAGAGGAAAAGACTCGCAATAAGCAGATCCAAGCATCTATTGCCCAGACTTTTCGGCGACAATCAGAAGCACTTGGTAGGAGGCGCACAACTGCTAAAGCCACGGCAGCTGCATTTATTAGGAGATCACAGGGGAGTTATCGGAGAGGGAGAAGTAGAAACAGTCGAGGCGCAGAACTTCAAGGATCTGATGATGATGAAGATGGAAATGGTAATGAGGGAGGCAGAGATTCATCTTCTGCTGATGAGCGCTGTGCAGATGTCAAGCAGAAAAGGTGCAAGAGATGGGGAGGGCCGCGGTTCTCTCAGCCTTCTTCAGCAGCTGCCAATGCAGATGGAGGCTGCGACGAAAATGATGATTTAGAAGTGAGCAGAGAAAGCACAGGTGCATCTCCTGGGCTTGTTGGGAACCCAGAAGTGCTTGCTTGGGGCAAGGGCGGTGTGCGGAGTCACACGCGATATGGAAGTGTCAGTGGTAGTAATGGTAAGAATGCCTTTCGGAGCAACCGCGTAGCCAAGTTGGTAGATTATCTCCGAAGCTTAGAGGAAAATGACAATGAGTTGGATGTACATCTCACTCTTCTTCCTTTGGATGAACAAAGTATACCAAGTTTGCAGCGCCCATTCCTTTGCTGCCAGCCGACTTTGTCAGTTAGACACCTATGTCAAGTGAAATTCCCCTCCACCTCGTTCCTTCGATCTCAATTGCATCTTATTTTTAATTTTTTATTTCGAATTTTTTGGGATTCTCACTTTCACTCAAAAGTTGTGTTGGTAATGCATGTATTTATACAGTATGTCGCTCTCCAGACTCCTGTTCCAGCTGAAGAAATTGAAATATTAGTGGTAAAAGAGCCCCGTTGTACAACTGCAGAGGAATGTAGGTCCATGTTCAACCCTACAAACTCCACGGATGATCCAATTCCCAAGGTTGATCCTTGCAAAGATGAGCTGCAAATATTGGAAGAGCAAGGAACTTTGGCGGGTCTGCAAGCTAATTGCACTTGTAGTCGAGGCCATCTGGTGAGTTCTTCCTTTCAGAAACAAAACTATATTTAG 1482 0.4582 MPAQKRSSENLEEDSLQRHHYPRHQGGEEEEEGEDSDGSLSSSEGDKDEFILVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYEEEELAFHEEEKTRNKQIQASIAQTFRRQSEALGRRRTTAKATAAAFIRRSQGSYRRGRSRNSRGAELQGSDDDEDGNGNEGGRDSSSADERCADVKQKRCKRWGGPRFSQPSSAAANADGGCDENDDLEVSRESTGASPGLVGNPEVLAWGKGGVRSHTRYGSVSGSNGKNAFRSNRVAKLVDYLRSLEENDNELDVHLTLLPLDEQSIPSLQRPFLCCQPTLSVRHLCQVKFPSTSFLRSQLHLIFNFLFRIFWDSHFHSKVVLVMHVFIQYVALQTPVPAEEIEILVVKEPRCTTAEECRSMFNPTNSTDDPIPKVDPCKDELQILEEQGTLAGLQANCTCSRGHLVSSSFQKQNYI* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00993 493 ProSitePatterns Zinc finger RING-type signature. 80 89 IPR017907 -
Eupl06g00993 493 Coils Coil 489 493 - -
Eupl06g00993 493 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 169 IPR013083 -
Eupl06g00993 493 SMART ring_2 64 103 IPR001841 -
Eupl06g00993 493 CDD RING-HC_RING1-like 61 126 - -
Eupl06g00993 493 SUPERFAMILY RING/U-box 54 135 - -
Eupl06g00993 493 MobiDBLite consensus disorder prediction 7 29 - -
Eupl06g00993 493 ProSiteProfiles Zinc finger RING-type profile. 64 104 IPR001841 -
Eupl06g00993 493 MobiDBLite consensus disorder prediction 1 44 - -
Eupl06g00993 493 PANTHER OS11G0578200 PROTEIN 12 485 IPR044592 -
Eupl06g00993 493 MobiDBLite consensus disorder prediction 218 235 - -
Eupl06g00993 493 MobiDBLite consensus disorder prediction 161 279 - -
Eupl06g00993 493 Pfam Zinc finger, C3HC4 type (RING finger) 63 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00993 Eupl-Chr6 16188202 16210078 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00993 62 187 C3H Transcription Factor Family AT2G30580 31.061 5.45e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00993 K10695 - nnu:104608182 626.32