Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00989 ATGCAGCAGGAGAGAAGAGGAGGAGGAAGAATGGAAGACATGGAAGGGTTGCAACAGCAAGATCGGCGAGGAGTGAAGCCAAACCCAGATCATCAACCACCCCAGCAACCACAGAAGTGTCCTCGTTGTGAGTCTCTCAACACCAAATTCTGTTATTACAACAATTACAGCCTCTCTCAGCCTCGTTACTTCTGTAAGGCATGTAGGAGATACTGGACTCAAGGAGGAACCTTGAGAAATGTTCCCGTCGGTGGTGGTTGTCGAAAGGGAAAACGATCCAAGAGACCCTCTTCGTCCGATAATCAACAACCACCGCAGCCCAATTTAACTACAGTAGCCACCACAACCGCCACCACTAATGTCACTTCTTCTCCAATACCTCCGATCGGAGCAGCCTCTTCTATGTACTACCCCGGTGGAGGGTTCTTGTCTTCGATGCAAGCTTTTCAATCTTTCAACCAACCCATTAACGTCGGTGGTGATTACAGAGGTTCTAATATGGCTCTTCTACAGGGATTCAGTTTCCCTTCTCTTAATTTCCAGCAGCAACAACAACAACAAGTTCATCAATCACAAGTTTTTCAAATGGGTAATAGAGATAAGGCAGTAGATCAAATTTTACCTTTGGAGAACGTAATTCAACCAAACAGGCCTTCTATATCTCATCAAGATTGGCCTCCTATGGCATCTGAAGCTGGTTATTGGAGCAACAACAACAACAACACCAACAGTAGCAGTACTGGTCCGTCTTTGAACCAAATTCAATGGCCTGATATACCAGGTTTTGGTCCTCCACCTTCATCTTCTTCACCATCTTTCTGA 822 0.455 MQQERRGGGRMEDMEGLQQQDRRGVKPNPDHQPPQQPQKCPRCESLNTKFCYYNNYSLSQPRYFCKACRRYWTQGGTLRNVPVGGGCRKGKRSKRPSSSDNQQPPQPNLTTVATTTATTNVTSSPIPPIGAASSMYYPGGGFLSSMQAFQSFNQPINVGGDYRGSNMALLQGFSFPSLNFQQQQQQQVHQSQVFQMGNRDKAVDQILPLENVIQPNRPSISHQDWPPMASEAGYWSNNNNNTNSSSTGPSLNQIQWPDIPGFGPPPSSSSPSF* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00989 273 ProSiteProfiles Zinc finger Dof-type profile. 38 92 IPR003851 GO:0003677|GO:0006355
Eupl06g00989 273 MobiDBLite consensus disorder prediction 82 110 - -
Eupl06g00989 273 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 25 210 IPR045174 GO:0003700|GO:0006355
Eupl06g00989 273 ProSitePatterns Zinc finger Dof-type signature. 40 76 IPR003851 GO:0003677|GO:0006355
Eupl06g00989 273 MobiDBLite consensus disorder prediction 215 273 - -
Eupl06g00989 273 MobiDBLite consensus disorder prediction 1 28 - -
Eupl06g00989 273 MobiDBLite consensus disorder prediction 232 254 - -
Eupl06g00989 273 Pfam Dof domain, zinc finger 36 92 IPR003851 GO:0003677|GO:0006355
Eupl06g00989 273 MobiDBLite consensus disorder prediction 1 40 - -
Eupl06g00989 273 MobiDBLite consensus disorder prediction 259 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00989 Eupl-Chr6 16137690 16140522 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00989 32 107 C2C2-Dof Transcription Factor Family AT5G60200 68.421 1.17e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Eupl06g00989 zf-Dof 6.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00989 - - nnu:104608186 263.077