Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00979 ATGACGGTAGCGGACTGGCAAGCTGATAAGATGCTTGATCGTTACATACATGATTACATGGTGAAAAACAATTTACATAAGGCAGCCCAAACATTCACGAAGGAGGCAGATATTTCGCCTCAGCCTATCGGGATCGATTCCCCTGGAGGTTTCTTATTCGATTGGTGGTCCATATTTTATGAAACGTTTGCTGGGGAAGAAGCTAGAGCCAAGGCTAGACATTTGAGGGAAGTTGAGCAACAAGAACAAAATCATTCTGAGTTGCAACATTATTATATGTATCGGCAGAGTGTTGCGAAGCGGCCTATTGGGCTTGATTCTGAGAATATGTCGGGACAACCGGCTGCTTGCTTGTTGACTGCCAAAATTTATGGGGAGGAGAGGCTCAGACATCATTCTTCTAGAAATTTGGATCCCAATTTACAGCTTGTCGATGTTAATAAATTGACTCACTGCAAATCGGTGGCCAAAAATCCTGGCTATGCAAAACAACAAGTTCATATACAGACTCAAGAACGAGCGGGCAATAGACAGAAAATTAGTTTGGGCAGGTCCCTACCTGTGGAGCCAACACTCCATGGTGTACCAAAAGCCATGCTCTCGAGATCTGGATTTTGCGAAGCAGGTTTGAACAAAGGGGCCAGTCCTCTGCCATTGAACGGTTGGCCTTTAACTGGAATTGAGCAAATCCCCCCAGGATTGGGGCAGCAAGGGTCTGGTGAAATTGGTGGACTGGCTGAAATTTCAGAAAAGATGGGTGATATCACTGGTGATAGTGATGGTTCCTCAAATGACAACGTGGAATCCTTTTTGTCCCATGATATTGGCAATGATGATACAAGGCATGTCCCTTTCAGCACCTTGCAGCGAAGTTCTACAGTTCGCAACACAAATACTCCAAAAGGCTTCTCTTTTGAAAAGGTAGGTTGCCTACATGCAAGCAAAAGCAAGGTCACTTGCTGCCATTTCTCATCAGATGGAAAATTGTTAGCTAGTGCTGGGCATGATAAGAAGGTGGTACTTTGGGACATGGATACCTTTGAATTCAAGAGTACTTCAGAAGGGCATTCTCTTCTGATTACAGATGTTCGATTTAGACCGAATTCAACCCTCTTGGCTACATCTTCCTTTGATAAAACAGTGCAAGTTTGGGATGCAACTAATCCAAGCCATTCATTATACAAGCTTATTGGACACACGGAACAAGTGCTGTCATTGGATTTTCACCCAAAGAAGGTGGACCTCCTGAGCTCATGTGATGATAATGGTGAAATCCGGCTATGGAATGTCAACCAATGTGCATGCATACGCATCTCCAAGGGCGGTACTACCCAAGTCAGATTCCAGCCTCGAGATGGGCAGCTTTTGGCTGCTGTTTCAGGGAATGGTGTCAGCGTACTCGATGTTGAGACTAACCACCTCCAGTTAACCTTGCAGGGACATGGCAAGGTAGTACACTCAATCTGTTGGAATACAACTGGGGAATATATTGCTTCTGTTAGCGAAGACCGCGTCCGTGTGTGGTCAACTGTGTCTGGTGAATACATACATGAGCTTTGTTCCAATGGCAACAAGTTCCGATCCTGCACCTTCCATCCTGGATATTCCCTACTCTTGGTTATTGGTGGCTACCAGTCCCTTGAATTGTGGAATCCAACGGATACTAAGACAATGACAGTTCCAGCACATGATGGGTTGATTTCTGCATTGGCGAATTCTCCAACCACCGAAATGCTTGCCTCAACCAGTCATGACCAGTGTGTAAAGCTATGGAAATGA 1779 0.4508 MTVADWQADKMLDRYIHDYMVKNNLHKAAQTFTKEADISPQPIGIDSPGGFLFDWWSIFYETFAGEEARAKARHLREVEQQEQNHSELQHYYMYRQSVAKRPIGLDSENMSGQPAACLLTAKIYGEERLRHHSSRNLDPNLQLVDVNKLTHCKSVAKNPGYAKQQVHIQTQERAGNRQKISLGRSLPVEPTLHGVPKAMLSRSGFCEAGLNKGASPLPLNGWPLTGIEQIPPGLGQQGSGEIGGLAEISEKMGDITGDSDGSSNDNVESFLSHDIGNDDTRHVPFSTLQRSSTVRNTNTPKGFSFEKVGCLHASKSKVTCCHFSSDGKLLASAGHDKKVVLWDMDTFEFKSTSEGHSLLITDVRFRPNSTLLATSSFDKTVQVWDATNPSHSLYKLIGHTEQVLSLDFHPKKVDLLSSCDDNGEIRLWNVNQCACIRISKGGTTQVRFQPRDGQLLAAVSGNGVSVLDVETNHLQLTLQGHGKVVHSICWNTTGEYIASVSEDRVRVWSTVSGEYIHELCSNGNKFRSCTFHPGYSLLLVIGGYQSLELWNPTDTKTMTVPAHDGLISALANSPTTEMLASTSHDQCVKLWK* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00979 592 Pfam WD domain, G-beta repeat 393 429 IPR001680 GO:0005515
Eupl06g00979 592 Pfam WD domain, G-beta repeat 354 385 IPR001680 GO:0005515
Eupl06g00979 592 Pfam WD domain, G-beta repeat 558 592 IPR001680 GO:0005515
Eupl06g00979 592 Pfam WD domain, G-beta repeat 312 343 IPR001680 GO:0005515
Eupl06g00979 592 Pfam WD domain, G-beta repeat 474 509 IPR001680 GO:0005515
Eupl06g00979 592 Gene3D - 285 440 IPR015943 GO:0005515
Eupl06g00979 592 SMART WD40_4 512 551 IPR001680 GO:0005515
Eupl06g00979 592 SMART WD40_4 346 385 IPR001680 GO:0005515
Eupl06g00979 592 SMART WD40_4 304 343 IPR001680 GO:0005515
Eupl06g00979 592 SMART WD40_4 432 468 IPR001680 GO:0005515
Eupl06g00979 592 SMART WD40_4 553 592 IPR001680 GO:0005515
Eupl06g00979 592 SMART WD40_4 389 429 IPR001680 GO:0005515
Eupl06g00979 592 SMART WD40_4 471 509 IPR001680 GO:0005515
Eupl06g00979 592 CDD WD40 315 592 - -
Eupl06g00979 592 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 396 431 - -
Eupl06g00979 592 ProSiteProfiles Trp-Asp (WD) repeats profile. 396 438 IPR001680 GO:0005515
Eupl06g00979 592 SUPERFAMILY WD40 repeat-like 304 592 IPR036322 GO:0005515
Eupl06g00979 592 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 250 592 IPR044716 GO:0003714
Eupl06g00979 592 ProSitePatterns Trp-Asp (WD) repeats signature. 416 430 IPR019775 -
Eupl06g00979 592 ProSiteProfiles Trp-Asp (WD) repeats profile. 311 352 IPR001680 GO:0005515
Eupl06g00979 592 Pfam LisH 10 36 IPR006594 GO:0005515
Eupl06g00979 592 Gene3D - 441 592 IPR015943 GO:0005515
Eupl06g00979 592 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 560 592 - -
Eupl06g00979 592 SMART Lish 8 40 IPR006594 GO:0005515
Eupl06g00979 592 ProSiteProfiles Trp-Asp (WD) repeats profile. 560 592 IPR001680 GO:0005515
Eupl06g00979 592 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 353 385 - -
Eupl06g00979 592 ProSitePatterns Trp-Asp (WD) repeats signature. 330 344 IPR019775 -
Eupl06g00979 592 PRINTS G protein beta WD-40 repeat signature 330 344 IPR020472 -
Eupl06g00979 592 PRINTS G protein beta WD-40 repeat signature 372 386 IPR020472 -
Eupl06g00979 592 PRINTS G protein beta WD-40 repeat signature 579 592 IPR020472 -
Eupl06g00979 592 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Eupl06g00979 592 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 311 346 - -
Eupl06g00979 592 ProSiteProfiles Trp-Asp (WD) repeats profile. 353 385 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00979 Eupl-Chr6 16028481 16036309 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00979 329 508 U-box Gene Family AT2G33340 30.000 4.45e-14 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Eupl06g00979 WD40 0.003 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00979 - - rcu:8258453 513.457